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environment.yml
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environment.yml
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name: lucaprot
channels:
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- ca-certificates=2023.01.10=h06a4308_0
- ld_impl_linux-64=2.38=h1181459_1
- libffi=3.3=he6710b0_2
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libstdcxx-ng=11.2.0=h1234567_1
- ncurses=6.4=h6a678d5_0
- openssl=1.1.1t=h7f8727e_0
- pip=23.0.1=py39h06a4308_0
- python=3.9.13=haa1d7c7_2
- readline=8.2=h5eee18b_0
- setuptools=66.0.0=py39h06a4308_0
- sqlite=3.41.2=h5eee18b_0
- tk=8.6.12=h1ccaba5_0
- tzdata=2023c=h04d1e81_0
- wheel=0.38.4=py39h06a4308_0
- xz=5.2.10=h5eee18b_1
- zlib=1.2.13=h5eee18b_0
- pip:
- absl-py==1.4.0
- aiohttp==3.8.4
- aiosignal==1.3.1
- antlr4-python3-runtime==4.9.3
- astunparse==1.6.3
- async-timeout==4.0.2
- attrs==23.1.0
- beautifulsoup4==4.11.1
- biopython==1.80
- biotite==0.35.0
- brotlipy==0.7.0
- cachetools==5.3.0
- certifi==2022.12.7
- cffi==1.15.1
- chardet==3.0.4
- charset-normalizer==3.1.0
- contextlib2==21.6.0
- contourpy==1.0.7
- crc32c==2.3.post0
- cycler==0.11.0
- deepspeed==0.5.9
- dllogger==1.0.0
- dm-tree==0.1.8
- einops==0.6.1
- fair-esm==2.0.0
- filelock==3.12.0
- flatbuffers==23.3.3
- fonttools==4.39.3
- frozenlist==1.3.3
- fsspec==2023.4.0
- gast==0.4.0
- gemmi==0.5.8
- google-auth==2.17.3
- google-auth-oauthlib==0.4.6
- google-pasta==0.2.0
- grpcio==1.54.0
- h5py==3.8.0
- hjson==3.1.0
- huggingface-hub==0.12.0
- idna==2.10
- importlib-metadata==6.6.0
- joblib==1.2.0
- keras==2.11.0
- kiwisolver==1.4.4
- libclang==16.0.0
- lightgbm==3.3.5
- lightning-utilities==0.8.0
- markdown==3.4.3
- markupsafe==2.1.2
- matplotlib==3.6.3
- ml-collections==0.1.1
- mock==5.0.2
- msgpack==1.0.5
- multidict==6.0.4
- networkx==3.0
- ninja==1.11.1
- numpy==1.24.2
- nvidia-cublas-cu11==11.10.3.66
- nvidia-cuda-nvrtc-cu11==11.7.99
- nvidia-cuda-runtime-cu11==11.7.99
- nvidia-cudnn-cu11==8.5.0.96
- oauthlib==3.2.2
- obonet==0.3.1
- omegaconf==2.3.0
- opt-einsum==3.3.0
- packaging==23.1
- pandas==1.5.3
- pickle5==0.0.11
- pillow==9.3.0
- protobuf==3.19.6
- psutil==5.9.5
- py-cpuinfo==9.0.0
- pyasn1==0.5.0
- pyasn1-modules==0.3.0
- pycparser==2.21
- pyparsing==3.0.9
- python-dateutil==2.8.2
- pytorch-lightning==2.0.2
- pytz==2023.3
- pyyaml==6.0
- regex==2023.3.23
- requests==2.24.0
- requests-oauthlib==1.3.1
- rsa==4.9
- scikit-learn==1.2.1
- scipy==1.10.1
- seaborn==0.12.2
- six==1.16.0
- soupsieve==2.4.1
- subword-nmt==0.3.8
- tensorboard==2.11.2
- tensorboard-data-server==0.6.1
- tensorboard-plugin-wit==1.8.1
- tensorboardx==2.5.1
- tensorflow==2.11.0
- tensorflow-estimator==2.11.0
- tensorflow-io-gcs-filesystem==0.32.0
- termcolor==2.3.0
- tfrecord==1.14.1
- threadpoolctl==3.1.0
- tokenizers==0.13.2
- torch==1.13.1
- torchaudio==0.13.1
- torchmetrics==0.11.4
- torchvision==0.14.1
- tqdm==4.64.1
- transformers==4.26.0
- triton==1.0.0
- typing-extensions==4.5.0
- urllib3==1.25.11
- werkzeug==2.2.2
- wget==3.2
- wrapt==1.14.1
- xgboost==1.7.3
- yarl==1.9.1
- zipp==3.12.0