1.3.0 (2023-10-07)
- add a mock test dataset for faster test run (8609a09)
- add an option to rename duplicates before seqkit sort (bfefd72)
- update main config.yaml (d63291e)
- fixed the issues with na p-values (c577d86)
- make igv_report optional so the pipeline can run without providing a gff/gtf file (61105b8)
1.2.4 (2023-09-19)
- add user defined manhattan plot parameters (b71f0fb)
- changed snakemake to snakemake-minimal (8f85998)
1.2.3 (2023-05-09)
- added init func. to initialize a new workdir (be02e7f)
- fixes broken input path (bcc1606)
1.2.2 (2023-05-03)
- fixed the issue with missing package data (4573f50)
1.2.1 (2023-04-24)
- fixed a typo (bcc6b70)
1.2.0 (2023-04-17)
- add a function to extract chromosome names and lengths from a SAM file (413ead9)
- add a rule for genome indexing (f2d596e)
- add a rule to convert BAM files to BED (a948d98)
- add a rule to convert kmers table to PLINK (8c4bfad)
- add error handling (da92bdb)
- add k-mer counts dist. plots (7df4787)
- add k-mer counts dist. plots (79427b4)
- add k-mer counts dist. plots (c45c412)
- add kGWASflow.py (698dcb8)
- add new functions, update checkpoints + target outputs (6dac404)
- add rules for converting BAM to BED (33ed058)
- add rules for generating igv reports (igv-report) (2c4b4fe)
- improve the kmers GWAS summary reports (9d5de9e)
- udpate config files + add new parameters (38c939b)
- update blast wrapper to v1.25.0 (3da03ba)
- update to kmc 3.2.1 (c933fda)
- change output, log paths and report caption (827dcad)
- change x and y-axis ticks and labels (c7cdf87)
- fixed typo (1238463)
- make the script compatible to new kmers GWAS summary reports (3dbecf0)
- specify the spades version (35d5690)
- update input file paths (05d7e6b)
- update input, ouput and params paths (4637ed6)
- update output directory paths + add touch (a0500c2)