You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Thanks for developing cisTopic. It's an awesome package. I am stuck in the very last analysis, where I am trying to run motif enrichment analysis on the topics. I am running the following and getting an error:
This is very similar to an issue posted before, but there it seemed the problem was a typo and reinstalling RCisTarget solved the issue. However, that did not work for me.
I would greatly appreciate some insights on how to solve this issue.
Thanks
Debbie
The text was updated successfully, but these errors were encountered:
debbie28
changed the title
Unused argument error while running
Unused argument error while running topicsRcisTarget
Aug 21, 2022
Hello!
Thanks for developing cisTopic. It's an awesome package. I am stuck in the very last analysis, where I am trying to run motif enrichment analysis on the topics. I am running the following and getting an error:
pathToFeather <- 'mm9-regions-9species.all_regions.mc9nr.feather'
Cistopic <- topicsRcisTarget(Cistopic, genome='mm9', pathToFeather, reduced_database=FALSE, nesThreshold=3, rocthr=0.005, nCores=8)
Error in do.ply(i) :
task 1 failed - "unused argument (geneErnMaxRank = maxRank)"
This is very similar to an issue posted before, but there it seemed the problem was a typo and reinstalling RCisTarget solved the issue. However, that did not work for me.
I would greatly appreciate some insights on how to solve this issue.
Thanks
Debbie
The text was updated successfully, but these errors were encountered: