Post_Merge_SV.inputs.json

{
  "##_COMMENT1": "DATA INPUTS",
  "Post_Merge_SV.aligned_crams": [
    "gs://mgi-wdl-test/data/call-Extract_Reads/shard-0/attempt-2/H_IJ-NA12878-NA12878_K10.cram",
    "gs://mgi-wdl-test/data/call-Extract_Reads/shard-1/attempt-4/H_IJ-NA12891-NA12891_D2.cram"
  ],
  "Post_Merge_SV.aligned_cram_indices": [
    "gs://mgi-wdl-test/data/call-Extract_Reads/shard-0/attempt-2/H_IJ-NA12878-NA12878_K10.cram.crai",
    "gs://mgi-wdl-test/data/call-Extract_Reads/shard-1/attempt-4/H_IJ-NA12891-NA12891_D2.cram.crai"
  ],
  "Post_Merge_SV.cn_hist_roots": [
    "gs://mgi-wdl-test/data/call-CNVnator_Histogram/shard-0/attempt-2/cnvnator.out/H_IJ-NA12878-NA12878_K10.cram.hist.root",
    "gs://mgi-wdl-test/data/call-CNVnator_Histogram/shard-1/cnvnator.out/H_IJ-NA12891-NA12891_D2.cram.hist.root"
  ],
  "Post_Merge_SV.merged_vcf": "gs://mgi-wdl-test/data/call-L_Merge_VCF_Variants/pilot-01.lmerge.vcf.gz",
  "Post_Merge_SV.cohort_name": "test-01",
  "Post_Merge_SV.aligned_cram_suffix": ".cram",
  "Post_Merge_SV.final_vcf_name": "test-01.vcf.gz",

  "##_COMMENT2": "REFERENCE FILES",
  "Post_Merge_SV.ref_fasta": "gs://human-b38/GRCh38DH/all_sequences.fa",
  "Post_Merge_SV.ref_fasta_index": "gs://human-b38/GRCh38DH/all_sequences.fa.fai",
  "Post_Merge_SV.ref_cache": "gs://human-b38/cache.tar.gz",
  "Post_Merge_SV.mei_annotation_bed": "gs://human-b38/GRCh38DH/annotations/repeatMasker.recent.lt200millidiv.LINE_SINE_SVA.GRCh38.sorted.bed.gz",

  "##_COMMENT3": "SYSTEM PARAMETERS",
  "Post_Merge_SV.disk_size": 60,
  "Post_Merge_SV.preemptible_tries": 3
}