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gibson2023.ttt
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gibson2023.ttt
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\begin{table}[!h]
\caption{\label{tab:chao-richness-table}Estimated richness of OTU counts across sites using the Chao estimator suggest that OTU richness is higher than observed and is characterized by large uncertainty at several sites.}
\centering
\begin{tabular}[t]{lrrr}
\toprule
Site & OTU Count & Chao Estimated Richness & Chao Richness SE\\
\midrule
Balboa & 15 & 19.9 & 5.0\\
Bay & 35 & 105.5 & 50.9\\
Downtown & 27 & 44.1 & 11.8\\
Freeway & 29 & 144.6 & 128.9\\
Mt. Davidson & 37 & 75.7 & 24.7\\
Ocean & 24 & 184.0 & 175.7\\
\bottomrule
\end{tabular}
\end{table}
\efloatseparator
\begin{table}[!h]
\caption{\label{tab:class-abundance-table}Overall sequenced fungal isolate counts by Class and Order. All fungi successfully sequenced in this study were placed within the Ascomycota.}
\centering
\begin{tabular}[t]{llr}
\toprule
Class & Order & Number of sequences\\
\midrule
Dothideomycetes & Capnodiales & 266\\
Dothideomycetes & Botryosphaeriales & 127\\
Dothideomycetes & Pleosporales & 52\\
Dothideomycetes & unclassified,Capnodiales & 3\\
Dothideomycetes & Trypetheliales & 1\\
Dothideomycetes & unclassified & 1\\
\addlinespace
Eurotiomycetes & Eurotiales & 57\\
\addlinespace
Leotiomycetes & Helotiales & 19\\
\addlinespace
Pezizomycetes & Pezizales & 54\\
\addlinespace
Sordariomycetes & Xylariales & 237\\
Sordariomycetes & Diaporthales & 49\\
Sordariomycetes & Coniochaetales & 38\\
Sordariomycetes & Sordariales & 9\\
Sordariomycetes & Hypocreales & 7\\
Sordariomycetes & Glomerellales & 1\\
\bottomrule
\end{tabular}
\end{table}
\efloatseparator
\begin{table}[!h]
\caption{\label{tab:permanova-table}PERMANOVA model output based on Bray-Curtis distance. Foliar fungal community composition in leaves of \emph{Metrosideros excelsa} across San Francisco is significantly related to both site of sampling and tree diameter at breast height (DBH), but the interaction between these parameters is not significant.}
\centering
\begin{tabular}[t]{lrrrrrr}
\toprule
Term & df & Sum of Squares & Mean of Squares & F & $R^{2}$ & p-value\\
\midrule
Site ID & 5 & 3.642 & 0.728 & 3.015 & 0.373 & 0.001\\
DBH (cm) & 1 & 0.556 & 0.556 & 2.302 & 0.057 & 0.007\\
Site x DBH & 5 & 1.208 & 0.242 & 1.000 & 0.124 & 0.484\\
Residuals & 18 & 4.349 & 0.242 & NA & 0.446 & NA\\
Total & 29 & 9.755 & NA & NA & 1.000 & NA\\
\bottomrule
\end{tabular}
\end{table}