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ERROR: Genelist not found! - i-ADHoRe #6

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AnastasiaChristinaki opened this issue Feb 8, 2023 · 0 comments
Open

ERROR: Genelist not found! - i-ADHoRe #6

AnastasiaChristinaki opened this issue Feb 8, 2023 · 0 comments

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@AnastasiaChristinaki
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Any suggestion?

I use the following .ini file

genome= myco
contig_1 myco/contig_1.lst
contig_3 myco/contig_3.lst
contig_4 myco/contig_4.lst
contig_7 myco/contig_7.lst
contig_8 myco/contig_8.lst
contig_9 myco/contig_9.lst
contig_10 myco/contig_10.lst
contig_13 myco/contig_13.lst
contig_16 myco/contig_16.lst
contig_21 myco/contig_21.lst
contig_27 mycocontig_27.lst
scaffold_12 myco/scaffold_12.lst
scaffold_17 myco/scaffold_17.lst

genome= dend
1 dend/1.lst
2 dendr/2.lst
3 dend/3.lst
4 dend/4.lst
5 dend/5.lst
6 dend/6.lst
7 dend/7.lst
8 dend/8.lst

blast_table= Cl_myco_vs_dendr_all.csv

output_path= myco_dend_output/

alignment_method=gg2
gap_size=30
cluster_gap=35
q_value=0.75
prob_cutoff=0.01
anchor_points=3
level_2_only=false
number_of_threads=4
multiple_hypothesis_correction=FDR

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