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I use the following .ini file
genome= myco contig_1 myco/contig_1.lst contig_3 myco/contig_3.lst contig_4 myco/contig_4.lst contig_7 myco/contig_7.lst contig_8 myco/contig_8.lst contig_9 myco/contig_9.lst contig_10 myco/contig_10.lst contig_13 myco/contig_13.lst contig_16 myco/contig_16.lst contig_21 myco/contig_21.lst contig_27 mycocontig_27.lst scaffold_12 myco/scaffold_12.lst scaffold_17 myco/scaffold_17.lst
genome= dend 1 dend/1.lst 2 dendr/2.lst 3 dend/3.lst 4 dend/4.lst 5 dend/5.lst 6 dend/6.lst 7 dend/7.lst 8 dend/8.lst
blast_table= Cl_myco_vs_dendr_all.csv
output_path= myco_dend_output/
alignment_method=gg2 gap_size=30 cluster_gap=35 q_value=0.75 prob_cutoff=0.01 anchor_points=3 level_2_only=false number_of_threads=4 multiple_hypothesis_correction=FDR
The text was updated successfully, but these errors were encountered:
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I use the following .ini file
genome= myco
contig_1 myco/contig_1.lst
contig_3 myco/contig_3.lst
contig_4 myco/contig_4.lst
contig_7 myco/contig_7.lst
contig_8 myco/contig_8.lst
contig_9 myco/contig_9.lst
contig_10 myco/contig_10.lst
contig_13 myco/contig_13.lst
contig_16 myco/contig_16.lst
contig_21 myco/contig_21.lst
contig_27 mycocontig_27.lst
scaffold_12 myco/scaffold_12.lst
scaffold_17 myco/scaffold_17.lst
genome= dend
1 dend/1.lst
2 dendr/2.lst
3 dend/3.lst
4 dend/4.lst
5 dend/5.lst
6 dend/6.lst
7 dend/7.lst
8 dend/8.lst
blast_table= Cl_myco_vs_dendr_all.csv
output_path= myco_dend_output/
alignment_method=gg2
gap_size=30
cluster_gap=35
q_value=0.75
prob_cutoff=0.01
anchor_points=3
level_2_only=false
number_of_threads=4
multiple_hypothesis_correction=FDR
The text was updated successfully, but these errors were encountered: