This repository is an Example using GitHub Actions [egga] for the Advanced Programming with R class. The project consists of a quarto document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last update was on 2024-11-26 16:13:46.
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Integrated pharmacokinetic-pharmacodynamic and agent-based modelling in drug development: Current status and future perspectives.
Yates JWT.
Adv Drug Deliv Rev. 2024 Nov 23:115474. doi: 10.1016/j.addr.2024.115474. Online ahead of print.
These approaches have largely made use of deterministic, differential equation-based models, however there is a growing use of agent-based models. In this review, the current applications and practices of agent-based model developm …
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Cost-Effectiveness of Extending Human Papillomavirus Vaccination to Population Subgroups Older Than 26 Years Who Are at Higher Risk for Human Papillomavirus Infection in the United States.
Laprise JF, Chesson HW, Markowitz LE, Drolet M, Brisson M.
Ann Intern Med. 2024 Nov 26. doi: 10.7326/M24-0421. Online ahead of print.
DESIGN: Individual-based transmission dynamic modeling of HPV transmission and associated diseases using HPV-ADVISE (Agent-based Dynamic model for VaccInation and Screening Evaluation). …
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Modeling Health and Economic Outcomes of Eliminating Sex Disparities in Youth Physical Activity.
Tamura K, Martinez MF, Deng Y, Heneghan J, Weatherwax C, Velmurugan K, Chin KL, Rogers B, Moniruzzaman M, Whitley M, Bartsch SM, O’Shea KJ, Dibbs A, Scannell S, Lee BY.
JAMA Netw Open. 2024 Nov 4;7(11):e2446775. doi: 10.1001/jamanetworkopen.2024.46775.
DESIGN, SETTING, AND PARTICIPANTS: This simulation study used an agent-based model representing all children (aged 6 to 17 years) in the US, their PA and sports participation levels, and relevant physical and physiologic characteristics (eg, body mass index) …
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CFD investigations of a shape-memory polymer foam-based endovascular embolization device for the treatment of intracranial aneurysms.
Cabaniss TL, Bodlak R, Liu Y, Colby GP, Lee H, Bohnstedt BN, Garziera R, Holzapfel GA, Lee CH.
Biomech Model Mechanobiol. 2024 Nov 25. doi: 10.1007/s10237-024-01910-x. Online ahead of print.
The hemodynamic and convective heat transfer effects of a patient-specific endovascular therapeutic agent based on shape-memory polymer foam (SMPf) are evaluated using computational fluid dynamics studies for six patient-specific aneurysm geometries. The SMPf device …
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Modelling the age pattern of fertility: an individual-level approach.
Ciganda D, Todd N.
R Soc Open Sci. 2024 Nov 20;11(11):240366. doi: 10.1098/rsos.240366. eCollection 2024 Nov.
Fitting statistical models to aggregate data is still the dominant approach in many demographic and biodemographic applications. Although these macro-level models have proven useful for a variety of tasks, they often have no demographic interpretation. …
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Personalizing computational models to construct medical digital twins.
Knapp AC, Cruz DA, Mehrad B, Laubenbacher RC.
bioRxiv [Preprint]. 2024 Nov 7:2024.05.31.596692. doi: 10.1101/2024.05.31.596692.
A commonly used modeling framework is that of an agent-based model, a computational model for simulating autonomous agents such as cells, which captures how system-level properties are affected by local interactions. …A fundamental problem tha …
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Modelling plausible scenarios for the Omicron SARS-CoV-2 variant from early-stage surveillance.
Banks CJ, Colman E, Wood AJ, Doherty T, Kao RR.
Epidemics. 2024 Nov 4;49:100800. doi: 10.1016/j.epidem.2024.100800. Online ahead of print.
We used a spatially explicit agent-based model of SARS-CoV-2 transmission combined with spatially fine-grained COVID-19 observation data from Public Health Scotland to investigate the initial rise of the Omicron (BA.1) variant of concern. …We found that the …
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An off-lattice discrete model to characterise filamentous yeast colony morphology.
Li K, Green JEF, Tronnolone H, Tam AKY, Black AJ, Gardner JM, Sundstrom JF, Jiranek V, Binder BJ.
PLoS Comput Biol. 2024 Nov 21;20(11):e1012605. doi: 10.1371/journal.pcbi.1012605. Online ahead of print.
We combine an off-lattice agent-based mathematical model and experimentation to explore filamentous growth of a yeast colony. …
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Key factors influencing sustainable population growth: A DEMATEL-ANP combined approach.
Pang F, Miao G, Li Y, Shi Y.
Heliyon. 2024 Oct 16;10(21):e39404. doi: 10.1016/j.heliyon.2024.e39404. eCollection 2024 Nov 15.
Experiments using government and international organization databases include comparative experiments with deep learning prediction models, ensemble learning models, Causal Inference Models, complex network analysis models, and agent-based …
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Collective responses of flocking sheep (Ovis aries) to a herding dog (border collie).
Jadhav V, Pasqua R, Zanon C, Roy M, Tredan G, Bon R, Guttal V, Theraulaz G.
Commun Biol. 2024 Nov 20;7(1):1543. doi: 10.1038/s42003-024-07245-8.
Our analyses reveal that, even though the dog chases the sheep flock from behind, directional information on shorter time scales propagates from the front of the group towards the rear; further, the dog adjusts its movement in response to the flock’s dynamics. We introduce an …
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