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Convert gridmet processing into snakemake pipeline #13

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jsadler2 opened this issue Apr 8, 2022 · 0 comments
Open

Convert gridmet processing into snakemake pipeline #13

jsadler2 opened this issue Apr 8, 2022 · 0 comments

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@jsadler2
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jsadler2 commented Apr 8, 2022

currently, the processing occurs in python scripts. It would be helpful to have it as a single snakemake pipeline.
jsadler2 added a commit that referenced this issue May 19, 2022
@jsadler2
[#13] first draft of snakefile
43dff4d
jsadler2 added a commit that referenced this issue May 19, 2022
@jsadler2
[#13] updates to snakefile
fbdfc2b
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue May 19, 2022
@jsadler2
[USGS-R#13] first draft of snakefile
cb6f166
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue May 19, 2022
@jsadler2
[USGS-R#13] updates to snakefile
4cad317
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue May 19, 2022
@jsadler2
[USGS-R#13] first draft of snakefile
fa5cb8e
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue May 19, 2022
@jsadler2
[USGS-R#13] updates to snakefile
d2a4daf
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue Jun 14, 2022
@jsadler2
[USGS-R#13] Snakefile parallel vars
a2224a5
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue Jun 14, 2022
@jsadler2
[USGS-R#13] remove uneeded data files
c7b23cd
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue Jun 14, 2022
@jsadler2
[USGS-R#13] S3 with Snakemake
d36a767
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue Jun 14, 2022
@jsadler2
[USGS-R#13] rm fxn calls from .py files
c38d1fd
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue Jun 14, 2022
@jsadler2
[USGS-R#13] config files for snakemake
c1faf55
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue Jun 14, 2022
@jsadler2
[USGS-R#13] instructions on running snakemake workflow
bffb26c
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue Jun 14, 2022
@jsadler2
[USGS-R#13] which config opts probs shouldn't change
1cdf7b4
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue Jun 15, 2022
@jsadler2
[USGS-R#13] more meaningful ids in output nc files
f6f3626
jsadler2 added a commit to jsadler2/drb_gridmet_tools that referenced this issue Jun 15, 2022
@jsadler2
[USGS-R#13] write and push zarr files
be5ca80
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