A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)
pyRona is not yet fully documented, but you can find the manual here.
If you came here looking for a way to automate the BayPass analysis, you should be especially interested in it's manual section. You can find the script here.
If you came here looking for a way to automate LFMM/LFMM2 analysws, you should be especially interested in it's manual section. You can find the scripts for both LFMM and LFMM2 here.
Installing pyRona can be as simple as typing pip3 install pyRona from the command line. For more information, and platform specific instructions, please consult the relevant manual section.
If you use pyRona please cite our pre-print: New insights on adaptation and population structure of cork oak using genotyping by sequencing paper: New insights into adaptation and population structure of cork oak using genotyping by sequencing
pyRona is licensed under the GNU GPLv3.