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[EPIC] Create Scaffold class #3

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3 of 4 tasks
savindi-wijenayaka opened this issue Aug 11, 2024 · 0 comments
Open
3 of 4 tasks

[EPIC] Create Scaffold class #3

savindi-wijenayaka opened this issue Aug 11, 2024 · 0 comments

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@savindi-wijenayaka
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savindi-wijenayaka commented Aug 11, 2024

Problem

One data format identified to express scaffolds in the initial screening was JSON. How to convert the JSON into VTK so that we can use it effectively for further mapping using Python.

Dependant issues

#2

Solution

  • Create Skeleton of Scaffold Class #6
  • JSON to VTK conversion
  • Add metadata to the class (retrieved from Pennsieve API or Sparc-me)
  • Convert to VTK.js for easy browser visualization.
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