build-sims-images.core

Bootstrap: localimage
From: images/p3-runtime.2019-1127.sif

# build with
# singularity -vvv build  /disks/scratch/olson/x.sif build-image.def
#

#
# Copy the sims folder into image
#
%files
/disks/tmp/nr-cache.fig /nr
/home/olson/FIGdisk/dist/releases/current/FortyEight/standalone-seed-sims-slurm.pl /

%post

rm -rf /bootstrap
#sed -i.bak -e 's,/disks/tmp/nr-cache.fig,/nr,g' /nr/010/nr.pal

%runscript
job=$1

url_base="https://core.theseed.org/sims"
auth=cdbb6ea4a0a5332614269ba0cb7081726a1efd4fd18414f913d70d4217cfddff
printenv | sort
export PATH=/opt/patric-common/runtime/bin:$PATH

perl /standalone-seed-sims-slurm.pl \
				    --nr /nr/$job \
				    $url_base $job $auth