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ui_pages.py
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ui_pages.py
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'''
Module containing ui page definitions for the Clarity LIMS Shiny App
'''
from shiny import App, render, ui, req, reactive
from faicons import icon_svg
# Contents of the Projects page
projects_page = ui.navset_tab(
ui.nav_panel("Table (Nov 2023 ->)",
ui.div(
ui.accordion(
ui.accordion_panel(
ui.output_text("filters_title_projects"),# Title handle by server function
ui.row(ui.column(3,
ui.input_date_range(
id="date_range_projects",
label="Open Date Range",
start=None, # Will be populated by the server function,
end=None, # Will be populated by the server function,
),
ui.input_action_button(
id="reset_date_projects",
label="Reset Date Filter",
),),
ui.column(3,
ui.input_checkbox(
id="project_comment_filter",
label="Show only projects with 'Comment'"
))),
value="filters", icon=icon_svg("filter"),
),
ui.accordion_panel(
ui.output_text("column_selection_title_projects"),
ui.div(
ui.div(
ui.div(
ui.input_checkbox_group(
id="fields_to_display_projects",
inline=False,
label=ui.div("Field Selection", class_="fw-bold"),
choices=[],
selected= [],
),
),
)
),
open=False,
value="column_selection_projects",
icon=icon_svg("table-columns")
),
class_="mb-3 mt-3",
open = False,
multiple=False
),
class_="mb-3"
),
ui.output_ui("data_projects")
),
ui.nav_panel("Info",ui.card(ui.output_ui("projects_info"))))
# Contents of the WGS samples page
wgs_samples_page = ui.navset_tab(
ui.nav_panel("Table (Nov 2023 ->)",
ui.div(
ui.accordion(
ui.accordion_panel(
ui.output_text("filters_title"), # Dynamic title handled by the server function
ui.row(ui.column(3,
ui.input_date_range(
id="date_range",
label="Received Date Range",
start= None, # Will be populated by the server function,
end=None # Will be populated by the server function,
),
ui.input_action_button(
id="reset_date",
label="Reset Date Filter",
),),
ui.column(3,
ui.input_selectize(
id="filter_progress",
label="Progress",
choices=[], # Will be populated by the server function,
multiple=True,
),),
ui.column(3,
ui.input_selectize(
id="filter_project_account",
label="Project Account",
choices=[], # Will be populated by the server function,
multiple=True,
),),
ui.column(3,
ui.input_selectize(
id="filter_experiment_name",
label="Experiment Name",
choices=[], # Will be populated by the server function
multiple=True
),),),
value="filters", icon=icon_svg("filter"),
),
ui.accordion_panel(
ui.output_text("column_selection_title"), # Dynamic title handled by the server function
ui.div(
ui.div(
ui.div(
ui.input_checkbox_group(
id="fields_to_display",
inline=False,
label=ui.div("Field Selection", class_="fw-bold"),
choices= [], # Will be populated by the server function
selected= [] # Will be populated by the server function
),
),
ui.div(
ui.input_radio_buttons(
id="presets",
label=ui.div("Presets", class_="fw-bold"),
choices=["All", "All (-IDs,Labels & billinginfo)", "Billing info only", "Custom"],
selected="All (-IDs,Labels & billinginfo)"
),
),
style="display: flex; align-items: flex-start;" # Places the preset list to the right of checkbox group
)
),
open=False,
value="column_selection",
icon=icon_svg("table-columns")
),
class_="mb-3 mt-3",
open = False,
multiple=False
),
class_="d-flex flex-column mb-3"
),
ui.output_ui("data_wgs"),
),
ui.nav_panel("Table Historical Data (Nov 2019 - Nov 2023)",
ui.div(
ui.accordion(
ui.accordion_panel(
ui.output_text("filters_title_historical"), # Dynamic title handled by the server function
ui.row(ui.column(3,
ui.input_slider(
id="slider_historical",
label="Løpende nr",
min= 0, # Will be populated by the server function,
max=5073, # Will be populated by the server function,
value=[0, 5073]
),),),
value="filters_historical", icon=icon_svg("filter"),),
ui.accordion_panel(
ui.output_text("column_selection_title_historical"), # Dynamic title handled by the server function
ui.div(
ui.input_checkbox_group(
id="fields_to_display_historical",
inline=False,
label=ui.div("Field Selection", class_="fw-bold"),
choices= [], # Will be populated by the server function
selected= [] # Will be populated by the server function
),
),
open=False,
value="column_selection_historical",
icon=icon_svg("table-columns")
),
class_="mb-3 mt-3",
open = False,
multiple=False
),
class_="d-flex flex-column mb-3"
),
ui.output_ui("historical_wgs")),
ui.nav_panel("Info",ui.card(ui.output_ui("wgs_info"))))
# Contents of the Prepared samples page
prepared_samples_page = ui.navset_tab(
ui.nav_panel("Table (Nov 2023 ->)",
ui.div(
ui.accordion(
ui.accordion_panel(
ui.output_text("filters_title_prepared"), # Filter icon
ui.row(ui.column(3,
ui.input_date_range(
id="date_range_prepared",
label="Received Date Range",
start=None, # Will be populated by the server function,
end=None, # Will be populated by the server function,
),
ui.input_action_button(
id="reset_date_prepared",
label="Reset Date Filter",
),),
ui.column(3,
ui.input_selectize(
id="filter_progress_prepared",
label="Progress",
choices=[], # Will be populated in the server,
multiple=True,
),),
ui.column(3,
ui.input_selectize(
id="filter_project_account_prepared",
label="Project Account",
choices=[], # Will be populated in the server,
multiple=True,
),),
ui.column(3,
ui.input_selectize(
id="filter_experiment_name_prepared",
label="Experiment Name",
choices=[], # Will be populated in the server
multiple=True
),),),
value="filters", icon=icon_svg("filter"),
),
ui.accordion_panel(
ui.output_text("column_selection_title_prepared"), # Dynamic title for Column Selection
ui.div(
ui.div(
ui.div(
ui.input_checkbox_group(
id="fields_to_display_prepared",
inline=False,
label=ui.div("Field Selection", class_="fw-bold"),
choices=[], # Will be populated by the server function
selected=[] # Will be populated by the server function
),
style="flex: 2; margin-right: 20px;"
),
style="display: flex; align-items: flex-start; width: 100%;"
)
),
open=False,
value="column_selection_prepared", # Provide a unique value
icon=icon_svg("table-columns")
),
class_="mb-3 mt-3",
open = False,
multiple=False
),
class_="mb-3"
),
ui.output_ui("data_prepared"),
),
ui.nav_panel("Info",ui.card(ui.output_ui("prepared_info"))))
# Contents of the Sequencing page
seq_page = ui.navset_tab(
ui.nav_panel("Table (Nov 2023 ->)",
ui.div(
ui.accordion(
ui.accordion_panel(
ui.output_text("filters_title_seq"), # Filter icon
ui.row(ui.column(3,
ui.input_date_range(
id="date_range_seq",
label="Date Range",
start=None, # Will be populated by the server function,
end=None, # Will be populated by the server function,
),
ui.input_action_button(
id="reset_date_seq",
label="Reset Date Filter",
),),
ui.column(3,
ui.input_selectize(
id="filter_cassette_seq",
label="Casette Type",
choices=[], # Will be populated in the server,
multiple=True,
),),
ui.column(3,
ui.input_selectize(
id="filter_reads_seq",
label="Read Length",
choices=[], # Will be populated in the server,
multiple=True,
),),),
value="filters", icon=icon_svg("filter"),
),
ui.accordion_panel(
ui.output_text("column_selection_title_seq"), # Dynamic title for Column Selection
ui.div(
ui.div(
ui.div(
ui.input_checkbox_group(
id="fields_to_display_seq",
inline=False,
label=ui.div("Field Selection", class_="fw-bold"),
choices=[], # Will be populated by the server function
selected=[] # Will be populated by the server function
),
),
#style="display: flex; align-items: flex-start; width: 100%;"
)
),
open=False,
value="column_selection_seq", # Provide a unique value
icon=icon_svg("table-columns")
),
class_="mb-3 mt-3",
open = False,
multiple=False
),
class_="mb-3"
),
ui.output_ui("data_seq"),
),
ui.nav_panel("Table Historical Data (Sept 2019 - Nov 2023)",
ui.div(
ui.accordion(
ui.accordion_panel(
ui.output_text("filters_title_SeqHistorical"), # Dynamic title handled by the server function
ui.row(ui.column(3,
ui.code("No filters yet defined"
),),),
value="filters_SeqHistorical", icon=icon_svg("filter"),),
ui.accordion_panel(
ui.output_text("column_selection_title_SeqHistorical"), # Dynamic title handled by the server function
ui.input_checkbox_group(
id="fields_to_display_SeqHistorical",
inline=False,
label=ui.div("Field Selection", class_="fw-bold"),
choices= [], # Will be populated by the server function
selected= [] # Will be populated by the server function
),
open=False,
value="column_selection_SeqHistorical",
icon=icon_svg("table-columns")
),
class_="mb-3 mt-3",
open = False,
multiple=False
),
class_="d-flex flex-column mb-3"
),
ui.output_ui("SeqHistorical")),
ui.nav_panel("Plots", ui.code("Plots will be displayed here. Waiting for iTables support for selecting data from the table: https://github.com/mwouts/itables/issues/250")),
ui.nav_panel("Info",ui.div(ui.code("NB!! Waiting for instrument integration for getting certain QC values. The data collection cron script will also be rewritten after instrument integration is in order NB!!"),
ui.card(ui.output_ui("seqRun_info"),))))