introduction.md

Common introduction

This page will contain information regarding the common introduction part for the bioinformatics course at the NVI.

2017-12-07

For this session, you will:

• continue on the Unix intro module from last time
• learn about how to work on abel

2017-11-30

During this session you will:

• get a laptop which runs windows 10, and which has virtualbox installed on it. Please note: this computer should NEVER be connected to the wired network at the Institute.
• get a linux image installed inside the virtualbox program. This will give you a linux computer living inside of a program on your laptop
• learn how to use unix and linux.

Links for this session

• How to use your virtualbox, and how to get biolinux installed
• Using the unix shell

Files necessary for today's session

• The virtualbox program (already installed on VI computers)
• Biolinux image (This will provided to you in a USB drive)
• Biolinux manual (available within Biolinux after you install)
• Setup info, incl. download info for the unix sesssion (you will be instructed to download this later in the day)

2017-12-14

During this session you will:

• learn how to use FastQC to check the quality of fastq data.
• learn how to use Trimmomatic to trim/remove adapter and low quality reads.

Links for this session

• Data pre-processing with FastQC and Trimmomatic

Files necessary for today's session

• Files necessary for this session is available within abel and information is available in the above link on how to use it

/work/projects/nn9305k/tmp/Files_for_Dec14/

2018-01-11

During this session you will:

• be introduced to the programming language R.
• Learn how to use R-studio.
• Learn how to write and and run R programs.
• Learn how to write reproducible code in R.

Links for this session

• Lecture: preparation for the lecture