Mouse Imaging Summer School 2017

In this repository you will find slides and code for the summer school sessions.

Monday

Why Mouse Structural MRI - Dulcie Vousden
Mouse MRI Primer - Leigh Spencer Noakes, Aidin Arbabi, and Jacob Ellegood
Mouse MRS Primer - Leigh Spencer Noakes, Gena Markous, and Brian Nieman
Intro to bash - Dulcie Vousden

Tuesday

Intro to R - Chris Hammill
Intro to Statistics - Jason Lerch
Basic Anatomical Analysis - Jason Lerch
- DSURQE Atlas info
- DSURQE Atlas Download

Wednesday

Install Notes - Chris Hammill
Intro to Registration - Darren Fernandes
Multimodal Imaging - Elizabeth De Guzeman
Multimodal Analysis - Elizabeth De Guzeman and Yohan Yee

Thursday

In Vivo MRI - Kamila Szulc
- 4D atlas paper
- 4D atlas paper supplementary methods
Longitudinal Analysis - Lily Qiu and Darren Fernandes
Longitudinal Registration - Lily Qiu and Darren Fernandes
Longitudinal Analysis Demo - Darren Fernandes and Lily Qiu
Longitudinal Anatomy Trees - Jason Lerch

Friday

Power Analysis and Study Design - Jason Lerch