From d992c07a1d8f6c74ba7eff23833654883c0e94a6 Mon Sep 17 00:00:00 2001 From: rmflight Date: Fri, 20 May 2022 15:16:33 -0400 Subject: [PATCH] updated with uploaded versions of manuscript --- README.md | 18 ++++++++++++++++-- 1 file changed, 16 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 51d256d..26abaff 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,21 @@ Scan-Centric, Frequency-Based Method for Characterizing Peaks from Direct Inject Robert M Flight, Joshua M Mitchell, Hunter N.B. Moseley -doi: https://doi.org/10.1101/2022.04.14.488423 +doi: https://doi.org/10.1101/2022.04.14.488423 (V1 on bioRxiv) + +## Copies of Manuscript + +Copies of manuscript & supplemental materials: + + * [html manuscript](https://moseleybioinformaticslab.github.io/manuscript.peakCharacterization/scancentricpeakcharacterization.html) + * [html supplemental](https://moseleybioinformaticslab.github.io/manuscript.peakCharacterization/scancentricpeakcharacterization_supplemental.html) + * [pdf manuscript](https://moseleybioinformaticslab.github.io/manuscript.peakCharacterization/scancentricpeakcharacterization.pdf) + * [pdf supplemental](https://moseleybioinformaticslab.github.io/manuscript.peakCharacterization/scancentricpeakcharacterization_supplemental.pdf) + + +## ScanCentricPeakCharacterization Package + +If you are looking for the scan-centric peak characterization R package, it is available here: https://github.com/MoseleyBioinformaticsLab/ScanCentricPeakCharacterization ## Get A Copy of the Repository @@ -71,7 +85,7 @@ All of the various analysis pieces seem to be mostly intact, which means that it * lung_data: outputs related to the lung data * lungcancer_all: scripts related to running all the NSCLC files on remote machines. * assignments: all of the assignment files from the NSCLC samples in JSON form. -* ftms_artifacts/peaklists: the peak lists from XCalibur for all of the NSCLC samples in JSON form. +* ftms_artifacts/peaklists: the peak lists from Xcalibur for all of the NSCLC samples in JSON form. ## Notes on Re-Running Pieces