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DESCRIPTION
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DESCRIPTION
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Package: categoryCompare2
Version: 0.100.27
Title: Meta-Analysis of High-Throughput Experiments Using Feature
Annotations
Authors@R: c(
person(
given = c("Robert", "M"),
family = "Flight",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0001-8141-7788")))
URL: https://github.com/MoseleyBioinformaticsLab/categoryCompare2,
https://moseleybioinformaticslab.github.io/categoryCompare2
BugReports:
https://github.com/MoseleyBioinformaticsLab/categoryCompare2/issues
License: MIT + file LICENSE
Depends: R (>= 3.5.0)
Suggests: knitr, markdown, estrogen, org.Hs.eg.db, hgu95av2.db, limma,
affy, genefilter, testthat (>= 3.0.0), visNetwork, Cairo,
DiagrammeR, KEGGREST, docopt (>= 0.7.0), RCy3, hgu95av2cdf,
rmarkdown, fgsea, data.table, withr
Imports: Biobase, methods, AnnotationDbi, colorspace, graph, igraph,
jsonlite, base64enc, dplyr, purrr, rlang, GO.db, stats
LazyLoad: yes
Description: Facilitates comparison of significant annotations
(categories) generated on one or more feature lists.
Interactive exploration is facilitated through the use of
RCytoscape (heavily suggested).
SystemRequirements: Cytoscape (>= 3.0) (if used for visualization of
results, heavily suggested)
biocViews: Annotation, GO, MultipleComparison, Pathways, GeneExpression
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/testthat/edition: 3