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commit d07bcae410c67df3e7cf4a7eb0ff5c24b5949982
Author: DrOppenheimer <[email protected]>
Date: Wed Mar 20 17:35:59 2013 -0500
version number consistent with tag - 1.4
commit d9fdcd0eb53ea4d0a6da35ba37217e16c3b01f48
Merge: 64bbb4c 3861684
Author: teharrison <[email protected]>
Date: Tue Mar 19 07:09:28 2013 -0700
Merge pull request #5 from teharrison/master
added seq_length_stats.py updates, made extensions consistant
commit 386168409a95c723bcbde5f54d6a0c3aa934acb9
Author: Travis Harrison <[email protected]>
Date: Tue Mar 19 09:06:19 2013 -0500
gave python script .py ending
commit 087943252f49a9397aa316a6ff893e14f7bdf9da
Author: Travis Harrison <[email protected]>
Date: Tue Mar 19 09:05:42 2013 -0500
added performace updates and better error messages (from MG-RAST pipeline version)
commit 64bbb4cab29f7aca11e21a7b1bbb1c5028a88e08
Merge: 46cd1cd 23f4269
Author: teharrison <[email protected]>
Date: Mon Feb 11 19:53:58 2013 -0800
Merge pull request #4 from jaredbischof/master
Added the number of adapter contaminated and non-contaminated sequences to the output.
commit 23f4269c51f58221bf49805b90ec89caaea4dfa0
Author: Jared Bischof <[email protected]>
Date: Mon Feb 11 12:52:06 2013 -0600
Fixed some code that was out of scope.
commit 2044a2f51296d473fb8410811d7f56e3f34e68b9
Author: Jared Bischof <[email protected]>
Date: Mon Feb 11 12:26:11 2013 -0600
Added the number of adapter contaminated and non-contaminated sequences to the output.
commit 46cd1cde4bb905bc6c60cfaf0973919659749270
Merge: 8e7578d 067ac1f
Author: teharrison <[email protected]>
Date: Wed Feb 6 12:56:56 2013 -0800
Merge pull request #3 from jaredbischof/master
Modified code to include option for checking the sequence prefixes for adapter contamination.
commit 067ac1fe173f1fea14802bd6d662f2da96944387
Author: Jared Bischof <[email protected]>
Date: Wed Feb 6 14:49:28 2013 -0600
Fixed typo.
commit 8ec3a9d31bd86710ca5831cf2f2b6f6b5e1cdc0a
Author: Jared Bischof <[email protected]>
Date: Wed Feb 6 14:44:13 2013 -0600
Modified code to include option for checking the sequence prefixes (first 50bp) for adapter contamination. When turned on, statistics and output files are generated for both contaminated and non-contaminated bins, in addition to the combined statistics for all bins.
commit 8e7578d98a7c24eab4b096b01b02c9c408c933ac
Merge: 19b8a06 1829867
Author: teharrison <[email protected]>
Date: Wed Jan 30 13:05:57 2013 -0800
Merge pull request #2 from jaredbischof/master
Added a file of adapter sequences that we will use to look for adapter contamination.
commit 1829867be43853c4d3619a1b4b66aadec426efed
Author: Jared Bischof <[email protected]>
Date: Wed Jan 30 14:59:06 2013 -0600
Added this list of adapters that we will use for assessing whether or not sequences have been adapter contaminated.
commit 19b8a066c67d9dbd2bef85c397a38e0866807034
Author: Kevin Keegan <[email protected]>
Date: Thu Jan 3 11:29:23 2013 -0600
debugged main script
commit 8f564f39e7d6ddd1337c30b00c2ecc6292a90fcb
Author: Kevin Keegan <[email protected]>
Date: Thu Nov 29 14:39:59 2012 -0600
improved graphining scripts
commit 45b6a8d5b782ce9e1166deba608b65b2f46592a0
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 26 18:56:07 2012 -0600
Update plot_DRISEE.11-19-12.r
commit 30aa8377960f7d7169f4925f34f297333e96d503
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 26 18:52:30 2012 -0600
Update plot_DRISEE.11-19-12.r
commit d171d420aa90c9e644bba610ddf3c7a7106ed665
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 26 18:51:37 2012 -0600
Update plot_DRISEE.11-19-12.r
commit 0ae3f766171414d1c2e6703da1075e13e3347210
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 26 18:48:35 2012 -0600
Update plot_DRISEE.11-19-12.r
commit f28a3bcf3c643c1ef8417f0f948ddf8306322216
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 26 18:47:13 2012 -0600
Update plot_DRISEE.11-19-12.r
commit f09661afc06c52598ea1240d28cabbc70de2d942
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 26 18:45:21 2012 -0600
Update plot_DRISEE.11-19-12.r
commit 5b5a7c79a38737eecf60681bab4df8288a1b6aaa
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 26 18:44:37 2012 -0600
Update plot_DRISEE.11-19-12.r
commit 6f4d8cfad8e47559ba169125a9d1d8a6d21b04ff
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 26 18:27:58 2012 -0600
Update plot_DRISEE.11-19-12.r
commit d41d33f502a35eb50bbb667e23161c322d1d21af
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 26 18:26:53 2012 -0600
Update plot_DRISEE.11-19-12.r
commit 81b847ffdb45a0718d8cc990bb3061cc43ecfc35
Author: Kevin Keegan <[email protected]>
Date: Mon Nov 26 18:16:14 2012 -0600
fixed incorrect plotting plot_DRISEE.11-19-12.r
commit 0bec1ce15bb7bb9a6c9a4ce02410fa0330bf28cd
Author: Kevin Keegan <[email protected]>
Date: Mon Nov 26 17:10:02 2012 -0600
improved plot_DRISEE.11-19-12.r
commit ec3a418d4d5408025b42844da5f74b861bfd97da
Author: Kevin Keegan <[email protected]>
Date: Mon Nov 19 17:40:58 2012 -0600
minor changes to plot function (R) usage
commit e265e97939be83df6238a84e1aeb3c9dc1ce1e1c
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 19 17:38:26 2012 -0600
Update README.md
commit e761558477dce78e648814642c83b9c2d553e007
Author: DrOppenheimer <[email protected]>
Date: Mon Nov 19 17:37:05 2012 -0600
Update README.md
commit ba31d89f2d07ed78cbb89a623511abd60b4c473e
Author: Kevin Keegan <[email protected]>
Date: Mon Nov 19 17:29:09 2012 -0600
update plot scripts
commit 04a5821adc02dff2bea5b233c8b7db5f5c366b28
Author: Kevin Keegan <[email protected]>
Date: Mon Nov 19 16:26:28 2012 -0600
added plot_DRISEE scripts
commit fdaec295bcbb9b70dbcfc40c9ef75cdcae40eadd
Author: DrOppenheimer <[email protected]>
Date: Fri Nov 9 17:28:00 2012 -0600
Update drisee.py
commit abd93d579cbcdb4220fedc7f47547e69f1adcd51
Author: DrOppenheimer <[email protected]>
Date: Fri Nov 9 16:44:11 2012 -0600
Update drisee.py
commit cc365bee8c45f0786968c45ecfb44587a163890d
Author: Travis Harrison <[email protected]>
Date: Thu Aug 16 16:52:01 2012 -0700
fixed error when skipping filtering
commit 6c3105490850d330b18c96a6e9d3235b4cbddab1
Merge: 524178c e155f99
Author: DrOppenheimer <[email protected]>
Date: Wed Aug 1 12:21:15 2012 -0700
Merge pull request #1 from teharrison/master
updates to get code in line with changes in pipeline/bin - Thanks Travis - K
commit e155f99f40249d5b6b748426ecb078c5faa91e40
Author: Travis Harrison <[email protected]>
Date: Wed Aug 1 09:17:11 2012 -0500
changed defaults of option paramters that had reverse logic
commit 33e9aa6f93541cb9dbe3150771feccdca1cf4ff7
Author: Travis Harrison <[email protected]>
Date: Wed Aug 1 09:13:37 2012 -0500
added more excpetion handeling, fixed bug with header sorting
commit 7645ca8f9c3fcabb5f53ff9eb9597807d02b240b
Author: Travis Harrison <[email protected]>
Date: Wed Aug 1 09:07:28 2012 -0500
updated text in help blurb
commit d3b7858aff5b75f37a9ff8ad07db60e0b38a95e8
Author: Travis Harrison <[email protected]>
Date: Wed Aug 1 09:05:34 2012 -0500
updated text in help blurb
commit 4584185f16ca1586ed7c86b7fdf880d82293e98d
Author: Travis Harrison <[email protected]>
Date: Wed Aug 1 09:04:16 2012 -0500
added better error handeling/reporting, fixed bug with fastq record counting
commit 524178c06c2c4ccbaf3ebcc89d1fd65de02eedc7
Merge: 598e335 7572821
Author: Kevin Keegan <[email protected]>
Date: Fri May 11 14:50:27 2012 -0500
Merge branch 'master' of [email protected]:MG-RAST/DRISEE
commit 598e335d80c2b1ce71b945ca8307046962055e05
Author: Kevin Keegan <[email protected]>
Date: Fri May 11 14:47:07 2012 -0500
added license
commit 3b211a862f5c5e5eb08371da11aa9bde1af4b17f
Author: Kevin Keegan <[email protected]>
Date: Fri May 11 14:41:32 2012 -0500
added license as a separate txt file
commit 7572821bcc65e74ceb1af1638bdf3b3e572c58cd
Author: DrOppenheimer <[email protected]>
Date: Fri May 11 14:35:42 2012 -0500
Update README.md
commit 3eddeefd4fbcfc87c56633174f922c3252e9cf04
Author: Kevin Keegan <[email protected]>
Date: Fri May 11 14:32:56 2012 -0500
added the license as a separate file
commit 2142b38863bbdc7fbd0c954fbfe6a61727611ec2
Author: DrOppenheimer <[email protected]>
Date: Wed May 9 01:22:37 2012 -0500
Update drisee.py
commit be65959cf39333ea4895309175cf2db998d25b04
Author: Jared Wilkening <[email protected]>
Date: Thu May 3 11:37:31 2012 -0500
Added License to README.md
commit 019585570a6b25a7757e418f9cf31859ad4c4738
Author: DrOppenheimer <[email protected]>
Date: Mon Apr 2 17:34:15 2012 -0500
Update README.md
commit f81dc08f906f5ed14883321cd819be50502870e8
Author: DrOppenheimer <[email protected]>
Date: Mon Apr 2 17:32:49 2012 -0500
Update README.md
commit 10ceaaddf2232414934fb3e1491c03b40025aae2
Author: DrOppenheimer <[email protected]>
Date: Mon Apr 2 17:32:36 2012 -0500
Update README.md
commit bb840c59123c094f8291c141fd1a21071b6b58f8
Author: DrOppenheimer <[email protected]>
Date: Mon Apr 2 17:32:18 2012 -0500
Update README.md
commit 307a23c8455cf411d0847908b45c9f1bea041c8f
Author: DrOppenheimer <[email protected]>
Date: Mon Apr 2 17:31:55 2012 -0500
Update README.md
commit b1c7eef9e6fa1d6debe296fd0831fccf7c37c90b
Author: Kevin Keegan <[email protected]>
Date: Mon Apr 2 17:29:06 2012 -0500
add qiime-uclust
commit bf2c249f2cff14fa834fe7e2d288d497497ad222
Author: DrOppenheimer <[email protected]>
Date: Mon Apr 2 16:50:16 2012 -0500
Update README.md
commit bcd3951a284ce0c5e813e00737702aff1e56c974
Author: DrOppenheimer <[email protected]>
Date: Mon Apr 2 16:49:00 2012 -0500
Update README.md
commit 5a6186c5b3a3df423d489ecfb444deaa3cb9dee2
Author: Kevin Keegan <[email protected]>
Date: Mon Apr 2 16:47:39 2012 -0500
Edited the scripts
commit 4d658722b58ebaceb13ec337375b1bbd80578e11
Author: DrOppenheimer <[email protected]>
Date: Mon Apr 2 13:37:33 2012 -0500
Update README.md
commit 80ed7f88ff11f9e190660ef4a1678fda0420878c
Author: DrOppenheimer <[email protected]>
Date: Sat Mar 24 13:46:47 2012 -0500
Update DRISEE_requirements_check.sh
commit 28e85cc67f53a0769169674fd51802ea791c9a5b
Author: DrOppenheimer <[email protected]>
Date: Sat Mar 24 13:39:53 2012 -0500
Update README.md
commit 977cf0fb2edaf5d39a31830ccaa961ce91868cde
Author: DrOppenheimer <[email protected]>
Date: Fri Mar 23 13:31:24 2012 -0500
Update README.md
commit 8e1c8f671e4e7b40f677168c92cb8ce7a16c363d
Author: DrOppenheimer <[email protected]>
Date: Fri Mar 23 13:31:02 2012 -0500
Update README.md
commit f09645696afb5a77ca9831ab62f2c85fb29663f0
Author: DrOppenheimer <[email protected]>
Date: Fri Mar 23 13:29:25 2012 -0500
Update README.md
commit d2b3de9701e99ceb3daaeb72292ceeed51e7bcd0
Author: DrOppenheimer <[email protected]>
Date: Fri Mar 23 11:33:38 2012 -0500
Update README.md
commit 11c477df53ca8a39a066e5a03da155ca39914e7f
Author: DrOppenheimer <[email protected]>
Date: Fri Mar 23 11:32:59 2012 -0500
Update README.md
commit 417d8bfc2efb9a18c69afcd1c5c2bf062940e2c1
Author: DrOppenheimer <[email protected]>
Date: Fri Mar 23 11:29:39 2012 -0500
Update README.md
commit 5be5b321a16c302e328edb6ecabf28dae1503e5e
Author: DrOppenheimer <[email protected]>
Date: Fri Mar 23 11:28:48 2012 -0500
Update README.md
commit d8536e96bb49d55122017b87fd1205f5a22621cb
Author: DrOppenheimer <[email protected]>
Date: Fri Mar 23 11:27:44 2012 -0500
Update README.md
commit 5be5334831eff2893928ab1c955aa65a7da52e2b
Author: DrOppenheimer <[email protected]>
Date: Thu Mar 1 10:01:03 2012 -0600
Update README.md
commit 752b41dac093525a72fe6560673fc4721baa8097
Author: DrOppenheimer <[email protected]>
Date: Thu Mar 1 09:53:21 2012 -0600
Update README.md
commit ea7cd25d1aa09f3d1b3f3fead35fc34a7d5704a9
Author: DrOppenheimer <[email protected]>
Date: Thu Mar 1 09:51:38 2012 -0600
Update README.md
commit d71ab5b62dfbb807a6255f34a056bfeadd96fd70
Author: DrOppenheimer <[email protected]>
Date: Thu Mar 1 09:51:00 2012 -0600
Update README.md
commit bfdf54cc2a4ce968c8a734c0056aef0803eacf89
Author: DrOppenheimer <[email protected]>
Date: Thu Mar 1 09:50:29 2012 -0600
Update README.md
commit b6f9ff05640765dc923b23f843f69090c598cd99
Author: DrOppenheimer <[email protected]>
Date: Thu Mar 1 09:49:41 2012 -0600
Update README.md
commit 2f6a83cc9a0ab2fd23ff288620d211e83180b3e2
Author: DrOppenheimer <[email protected]>
Date: Thu Mar 1 09:48:57 2012 -0600
Update README.md
commit b1f812cb62a6381d38385f264dc548fabb7fe2f5
Author: DrOppenheimer <[email protected]>
Date: Thu Mar 1 09:48:00 2012 -0600
Update README.md
commit 8fb6f898c18128ad07423d73d05fb2b0d37c3153
Author: DrOppenheimer <[email protected]>
Date: Thu Mar 1 09:47:07 2012 -0600
Update README.md
commit 867ca57ef38f3bf98115c9a89752c8f448cb1c50
Author: DrOppenheimer <[email protected]>
Date: Thu Mar 1 09:45:59 2012 -0600
Update README.md
commit a62ef4588322151f443ac6d9be66ec3d5b55ffb6
Author: DrOppenheimer <[email protected]>
Date: Wed Feb 29 18:15:45 2012 -0600
Update README.md
commit 03caf0645fb45b7d63ca5cf0042284cfb5d5a713
Merge: 46ec011 a55310f
Author: Kevin <[email protected]>
Date: Wed Feb 29 18:11:54 2012 -0600
Merge branch 'master' of github.com:MG-RAST/DRISEE
commit 46ec011718cabef8ef5e6c19f0185cbb4766d497
Author: Kevin <[email protected]>
Date: Wed Feb 29 18:10:51 2012 -0600
add some zipped example files
commit a55310fd01aa02995752aae932ff107c9b1df909
Author: DrOppenheimer <[email protected]>
Date: Wed Feb 29 05:24:34 2012 -0500
Update README.md
commit 388a85b06ecd3f92762d4a1ec909ef792768dd50
Author: DrOppenheimer <[email protected]>
Date: Wed Feb 29 05:22:40 2012 -0500
Update README.md
commit d466ea9cb32bba456899969224dd724614ea3dd9
Author: DrOppenheimer <[email protected]>
Date: Wed Feb 29 05:21:42 2012 -0500
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Author: DrOppenheimer <[email protected]>
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Author: DrOppenheimer <[email protected]>
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Author: DrOppenheimer <[email protected]>
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Author: DrOppenheimer <[email protected]>
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commit 2f0461d9265ad71e55b4e758d6b1fbb59a92ce02
Author: DrOppenheimer <[email protected]>
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commit 9d1a428de3138c93f2d96880c0b751e1afaaeff1
Author: DrOppenheimer <[email protected]>
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commit 043dcdae9e8b8c03ea00c5a69e01e0225ece6f21
Author: DrOppenheimer <[email protected]>
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Author: DrOppenheimer <[email protected]>
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Author: DrOppenheimer <[email protected]>
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commit a8d04f6f37fd0ee23e2edcf00a9baa395781825f
Author: DrOppenheimer <[email protected]>
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Author: DrOppenheimer <[email protected]>
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Author: DrOppenheimer <[email protected]>
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Author: DrOppenheimer <[email protected]>
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commit 15df8a703f7c29f26f6eb4ec8dbe6b17248e76a9
Author: DrOppenheimer <[email protected]>
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Author: DrOppenheimer <[email protected]>
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commit 67e76c0eeca6ce481504faf63a1a2df37b2b2bf8
Author: Kevin <[email protected]>
Date: Fri Feb 24 16:59:56 2012 -0600
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Author: DrOppenheimer <[email protected]>
Date: Fri Feb 24 16:57:12 2012 -0600
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commit 0ceba828da21b0d4d984c35927312b24cf0b96cc
Author: DrOppenheimer <[email protected]>
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commit c8c0de33e1b5a2152ac02b0f28526507695f0a89
Author: DrOppenheimer <[email protected]>
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commit ca565813f647f6ce9faa3905efbb4b1e3e803363
Author: DrOppenheimer <[email protected]>
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commit 905b6bc091b147e90a86e7c702471d852ef1f96d
Author: DrOppenheimer <[email protected]>
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commit 617f8c4dd854c63161009c9fc8314254c631b408
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commit 4d051c15eeb6930f44994a63eb30124c0e1a78fc
Author: DrOppenheimer <[email protected]>
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commit f59a06a6301373c7ec8fffb131cd32ca0b3adb71
Author: DrOppenheimer <[email protected]>
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commit e6f9b9ec5dd5bc792825f6bdc0852ec57e8e35eb
Author: DrOppenheimer <[email protected]>
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commit a2acd7e5263f03a37007c4b37fc0a5381e98d00b
Author: DrOppenheimer <[email protected]>
Date: Fri Feb 24 16:33:17 2012 -0600
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commit 329a096ed79af588f5af9f0ae190d63a16747e28
Author: DrOppenheimer <[email protected]>
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Author: DrOppenheimer <[email protected]>
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commit 3f400dd19f24a5c472ac745477ce9bf42e4a03eb
Author: DrOppenheimer <[email protected]>
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commit 2713c95d0bf316d468d42cfc5ce6bc20127e1455
Author: DrOppenheimer <[email protected]>
Date: Fri Feb 24 16:21:29 2012 -0600
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commit c9d03461f162a09b44170c9dc6781ecf87249935
Author: DrOppenheimer <[email protected]>
Date: Fri Feb 24 16:20:23 2012 -0600
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commit 7da860a808b4aa445bed2682c6d532031ec481a9
Author: DrOppenheimer <[email protected]>
Date: Fri Feb 24 16:18:03 2012 -0600
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commit e5a25db5fcf499facb98c36aa4e8b210c46830d6
Author: Kevin <[email protected]>
Date: Fri Feb 24 16:14:27 2012 -0600
edited and reformatted readme
commit e720f19d6a0f4a46496f16d0a78182e89d578426
Author: Kevin <[email protected]>
Date: Fri Feb 24 15:59:59 2012 -0600
DRISEE 1 - 1.1 update; changes suggested by review. Major change, driving script is now Python-based. Command line access to all parameters was added -- you no longer have to edit shell/script files - Kevin 2-24-12
commit a658a893243321ea7e8bdf58daf9851af62156a5
Author: Kevin <[email protected]>
Date: Fri Feb 24 15:49:15 2012 -0600
DRISEE 1 - 1.1 update; changes suggested by review. Major change, driving script is now Python-based. Command line access to all parameters was added -- you no longer have to edit shell/script files - Kevin 2-24-12
commit c04a4a47f1616d61b5550289851825f059fbef56
Author: DrOppenheimer <[email protected]>
Date: Wed Oct 19 17:29:13 2011 -0500
Update drisee
commit 6a1dc15873e0b4d29d9c57b06a9c4f6c41a978ed
Author: DrOppenheimer <[email protected]>
Date: Wed Oct 19 17:01:45 2011 -0500
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commit bededbcd6ca217db0a79614533daf77dc5b9714f
Author: DrOppenheimer <[email protected]>
Date: Wed Oct 19 16:55:47 2011 -0500
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Author: DrOppenheimer <[email protected]>
Date: Wed Oct 19 16:47:37 2011 -0500
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commit 1ea50e74958571c4b5193acc23baead31ecbba3c
Author: Jared Wilkening <[email protected]>
Date: Tue Sep 6 15:42:35 2011 -0500
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Author: Jared Wilkening <[email protected]>
Date: Tue Sep 6 15:42:18 2011 -0500
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Author: Jared Wilkening <[email protected]>
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commit aab9a574ed63f2e5eadf80c3b1b4884c956395c3
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commit fd0e5b51af6fe29419a0d2882a14d3da14a3a5bf
Author: jared <[email protected]>
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commit a5fdc82d1aa41e646b5f9a0b15fc651c2b9d71f2
Author: jared <[email protected]>
Date: Tue Sep 6 15:37:59 2011 -0500
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commit 774d9c674b9adde7edc284c91e49d86cd35cccce
Author: jared <[email protected]>
Date: Tue Sep 6 15:34:09 2011 -0500
first commit