Release 2.1.0 #175
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| name: Continous integration | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - develop | |
| - master | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.8" | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install tox | |
| run: pip install tox | |
| - name: Lint | |
| run: tox -e lint | |
| docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install tox | |
| run: pip install tox | |
| - name: Build docs | |
| run: tox -e docs | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| - "3.12" | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install tox | |
| run: pip install tox | |
| - name: Run tests | |
| run: tox -e py3 | |
| - name: Upload coverage report | |
| uses: codecov/codecov-action@v1 | |
| test-functional-python-tools: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.11"] | |
| test-program: [snakemake, miniwdl] | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install tox | |
| run: pip install tox | |
| - name: Test | |
| shell: bash -l {0} # Needed for conda | |
| run: tox -e ${{ matrix.test-program }} | |
| test-functional-other: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| test-program: [ cromwell, nextflow ] | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Install conda | |
| uses: conda-incubator/[email protected] # https://github.com/conda-incubator/setup-miniconda. | |
| with: | |
| channels: conda-forge,bioconda,defaults | |
| installer-url: https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh | |
| channel-priority: true | |
| - name: Install test program and tox | |
| shell: bash -l {0} # Needed for conda | |
| run: mamba install ${{ matrix.test-program }} tox | |
| - name: Test | |
| shell: bash -l {0} # Needed for conda | |
| run: tox -e ${{ matrix.test-program }} |