Add optional io argument to versioninfo() #1156
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| name: Unit Tests | |
| on: | |
| pull_request: | |
| paths: | |
| - '.github/workflows/UnitTests.yml' | |
| - 'bin/**' | |
| - 'deps/**' | |
| - 'src/**' | |
| - 'test/**' | |
| - 'lib/**' | |
| push: | |
| branches: | |
| - master | |
| - release-* | |
| paths: | |
| - '.github/workflows/UnitTests.yml' | |
| - 'bin/**' | |
| - 'deps/**' | |
| - 'src/**' | |
| - 'test/**' | |
| - 'lib/**' | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: always. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test-default: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-latest | |
| - ubuntu-latest | |
| - windows-latest | |
| julia_version: | |
| - "1.6" | |
| - "1" | |
| - "nightly" | |
| julia_arch: [x64, x86] | |
| exclude: | |
| - os: macos-latest | |
| julia_arch: x86 | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| arch: ${{ matrix.julia_arch }} | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v1 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - uses: julia-actions/julia-runtest@latest | |
| test-openmpi-jll: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-latest | |
| - ubuntu-latest | |
| julia_version: | |
| - "1.6" | |
| - "1" | |
| - "nightly" | |
| julia_arch: [x64, x86] | |
| exclude: | |
| - os: macos-latest | |
| julia_arch: x86 | |
| fail-fast: false | |
| env: | |
| JULIA_MPI_TEST_BINARY: OpenMPI_jll | |
| JULIA_MPI_TEST_ABI: OpenMPI | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| arch: ${{ matrix.julia_arch }} | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v1 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use OpenMPI_jll | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| using MPIPreferences | |
| MPIPreferences.use_jll_binary("OpenMPI_jll", export_prefs=true) | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@latest | |
| test-system-brew: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| mpi: | |
| - mpich | |
| - openmpi | |
| julia_version: | |
| - "1" | |
| fail-fast: false | |
| runs-on: macos-latest | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| ZES_ENABLE_SYSMAN: 1 # https://github.com/open-mpi/ompi/issues/10142 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Install MPI via homebrew | |
| run: brew install $MPI | |
| env: | |
| MPI: ${{ matrix.mpi }} | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v1 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use system MPI | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary() | |
| - uses: julia-actions/julia-runtest@latest | |
| env: | |
| # TODO: Only disable this test for MPICH. OpenMPI works fine. | |
| JULIA_MPI_TEST_DISABLE_REDUCE_ON_APPLE: 1 | |
| test-system-apt: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| mpi: | |
| - libmpich-dev | |
| - libopenmpi-dev | |
| julia_version: | |
| - "1" | |
| fail-fast: false | |
| runs-on: ubuntu-20.04 | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| OMPI_MCA_btl_base_warn_component_unused: 0 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Install MPI via apt | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install $MPI | |
| env: | |
| MPI: ${{ matrix.mpi }} | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v1 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use system MPI | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary() | |
| - uses: julia-actions/julia-runtest@latest | |
| test-intel-linux: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| julia_version: | |
| - "1" | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| JULIA_MPI_TEST_ABI: MPICH | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Cache Intel MPI | |
| id: cache-intelmpi | |
| uses: actions/cache@v3 | |
| with: | |
| path: l_mpi_2019.9.304.tgz | |
| key: ${{ runner.os }}-intelmpi-2019.9.304 | |
| - name: Download Intel MPI | |
| if: steps.cache-intelmpi.outputs.cache-hit != 'true' | |
| run: wget https://registrationcenter-download.intel.com/akdlm/irc_nas/tec/17263/l_mpi_2019.9.304.tgz | |
| - name: Install Intel MPI | |
| run: | | |
| tar -xzf l_mpi_2019.9.304.tgz | |
| pushd l_mpi_2019.9.304 | |
| cat << EOF > intel.conf | |
| ACCEPT_EULA=accept | |
| CONTINUE_WITH_OPTIONAL_ERROR=yes | |
| PSET_INSTALL_DIR=${HOME}/intel | |
| CONTINUE_WITH_INSTALLDIR_OVERWRITE=yes | |
| PSET_MODE=install | |
| ARCH_SELECTED=ALL | |
| COMPONENTS=;intel-conda-index-tool__x86_64;intel-comp-l-all-vars__noarch;intel-comp-nomcu-vars__noarch;intel-imb__x86_64;intel-mpi-rt__x86_64;intel-mpi-sdk__x86_64;intel-mpi-doc__x86_64;intel-mpi-samples__x86_64;intel-mpi-installer-license__x86_64;intel-conda-impi_rt-linux-64-shadow-package__x86_64;intel-conda-impi-devel-linux-64-shadow-package__x86_64;intel-mpi-psxe__x86_64;intel-psxe-common__noarch;intel-compxe-pset | |
| EOF | |
| ./install.sh --silent intel.conf | |
| popd | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v1 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use system MPI | |
| run: | | |
| source ${HOME}/intel/compilers_and_libraries/linux/mpi/intel64/bin/mpivars.sh release | |
| julia --color=yes --project=. -e ' | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary()' | |
| # we can't use the usual actions here as we need to ensure the environment variables are set | |
| - name: "Run tests" | |
| run: | | |
| source ${HOME}/intel/compilers_and_libraries/linux/mpi/intel64/bin/mpivars.sh release | |
| julia --color=yes --project -e 'using Pkg; Pkg.test()' | |
| test-oneapi-linux: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| julia_version: | |
| - "1" | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| JULIA_MPI_TEST_ABI: MPICH | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Cache oneAPI MPI | |
| id: cache-oneapi-mpi | |
| uses: actions/cache@v3 | |
| with: | |
| path: l_mpi_oneapi_p_2021.7.0.8711_offline.sh | |
| key: ${{ runner.os }}-oneapi-mpi-2021.7.0.08711 | |
| - name: Download oneAPI MPI | |
| if: steps.cache-oneapi-mpi.outputs.cache-hit != 'true' | |
| run: wget https://registrationcenter-download.intel.com/akdlm/irc_nas/18926/l_mpi_oneapi_p_2021.7.0.8711_offline.sh | |
| - name: Install oneAPI MPI | |
| run: | | |
| chmod +x l_mpi_oneapi_p_2021.7.0.8711_offline.sh | |
| ./l_mpi_oneapi_p_2021.7.0.8711_offline.sh \ | |
| -a \ | |
| --silent \ | |
| --eula accept \ | |
| --ignore-errors \ | |
| --install-dir ${HOME}/oneapi \ | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v1 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use system MPI | |
| run: | | |
| source ${HOME}/oneapi/setvars.sh | |
| julia --color=yes --project=. -e ' | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary()' | |
| # we can't use the usual actions here as we need to ensure the environment variables are set | |
| - name: "Run tests" | |
| run: | | |
| source ${HOME}/oneapi/setvars.sh | |
| julia --color=yes --project -e 'using Pkg; Pkg.test()' | |
| test-system-msmpi: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| julia_version: | |
| - "1" | |
| fail-fast: false | |
| runs-on: windows-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Download Microsoft MPI | |
| run: (new-object net.webclient).DownloadFile("https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623/msmpisetup.exe", "msmpisetup.exe") | |
| shell: powershell | |
| - name: Install Microsoft MPI | |
| run: msmpisetup.exe -unattend -minimal | |
| shell: cmd | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v1 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: add MPIPreferences, use system | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary(; | |
| export_prefs=true, | |
| mpiexec="C:\\Program Files\\Microsoft MPI\\Bin\\mpiexec" | |
| ) | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@latest | |
| test-mpitrampoline-jll: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-latest | |
| - ubuntu-latest | |
| mpi: [mpitrampoline] | |
| julia_version: | |
| - "1.6" | |
| - "1" | |
| - "nightly" | |
| julia_arch: | |
| - x64 | |
| - x86 | |
| exclude: | |
| - os: macos-latest | |
| julia_arch: x86 | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| JULIA_MPI_TEST_BINARY: MPItrampoline_jll | |
| JULIA_MPI_TEST_ABI: MPItrampoline | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v1 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use MPItrampoline_jll | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| using MPIPreferences | |
| MPIPreferences.use_jll_binary("MPItrampoline_jll", export_prefs=true) | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@latest | |
| test-mpitrampoline-system-apt: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| mpi: | |
| - libmpich-dev | |
| - libopenmpi-dev | |
| julia_version: | |
| - "1" | |
| # We don't need to test all combinations | |
| # - "1.7" | |
| # - "nightly" | |
| MPIWrapper: | |
| - "2.10.3" | |
| fail-fast: false | |
| runs-on: ubuntu-20.04 | |
| env: | |
| JULIA_MPI_TEST_BINARY: MPItrampoline_jll | |
| JULIA_MPI_TEST_ABI: MPItrampoline | |
| MPITRAMPOLINE_LIB: /usr/local/lib/libmpiwrapper.so | |
| MPITRAMPOLINE_MPIEXEC: /usr/bin/mpiexec | |
| OMPI_MCA_btl_base_warn_component_unused: 0 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Install MPI via apt | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install $MPI | |
| env: | |
| MPI: ${{ matrix.mpi }} | |
| - name: Build MPIwrapper | |
| run: | | |
| wget https://github.com/eschnett/MPIwrapper/archive/refs/tags/v${MPIWrapper}.tar.gz | |
| tar xzf v${MPIWrapper}.tar.gz | |
| cd MPIwrapper-* | |
| cmake -DMPIEXEC_EXECUTABLE=mpiexec -DCMAKE_BUILD_TYPE=Debug -DCMAKE_INSTALL_PREFIX=/usr/local . | |
| cmake --build . | |
| sudo cmake --install . | |
| env: | |
| MPIWrapper: ${{matrix.MPIWrapper}} | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v1 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use MPItrampoline_jll | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| using MPIPreferences | |
| MPIPreferences.use_jll_binary("MPItrampoline_jll", export_prefs=true) | |
| rm("test/Manifest.toml") | |
| - uses: julia-actions/julia-runtest@latest | |
| test-mpitrampoline-intel-linux: | |
| timeout-minutes: 20 | |
| strategy: | |
| matrix: | |
| julia_version: | |
| - "1.6" | |
| # We don't need to test all combinations | |
| # - "1.7" | |
| # - "nightly" | |
| MPIWrapper: | |
| - "2.10.3" | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| env: | |
| JULIA_MPI_TEST_BINARY: MPItrampoline_jll | |
| JULIA_MPI_TEST_ABI: MPItrampoline | |
| MPITRAMPOLINE_LIB: /usr/local/lib/libmpiwrapper.so | |
| MPITRAMPOLINE_MPIEXEC: /home/runner/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpiexec | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Cache Intel MPI | |
| id: cache-intelmpi | |
| uses: actions/cache@v3 | |
| with: | |
| path: l_mpi_2019.9.304.tgz | |
| key: ${{ runner.os }}-intelmpi-2019.9.304 | |
| - name: Download Intel MPI | |
| if: steps.cache-intelmpi.outputs.cache-hit != 'true' | |
| run: wget https://registrationcenter-download.intel.com/akdlm/irc_nas/tec/17263/l_mpi_2019.9.304.tgz | |
| - name: Install Intel MPI | |
| run: | | |
| tar -xzf l_mpi_2019.9.304.tgz | |
| pushd l_mpi_2019.9.304 | |
| cat << EOF > intel.conf | |
| ACCEPT_EULA=accept | |
| CONTINUE_WITH_OPTIONAL_ERROR=yes | |
| PSET_INSTALL_DIR=${HOME}/intel | |
| CONTINUE_WITH_INSTALLDIR_OVERWRITE=yes | |
| PSET_MODE=install | |
| ARCH_SELECTED=ALL | |
| COMPONENTS=;intel-conda-index-tool__x86_64;intel-comp-l-all-vars__noarch;intel-comp-nomcu-vars__noarch;intel-imb__x86_64;intel-mpi-rt__x86_64;intel-mpi-sdk__x86_64;intel-mpi-doc__x86_64;intel-mpi-samples__x86_64;intel-mpi-installer-license__x86_64;intel-conda-impi_rt-linux-64-shadow-package__x86_64;intel-conda-impi-devel-linux-64-shadow-package__x86_64;intel-mpi-psxe__x86_64;intel-psxe-common__noarch;intel-compxe-pset | |
| EOF | |
| ./install.sh --silent intel.conf | |
| popd | |
| - name: Build MPIwrapper | |
| run: | | |
| source ${HOME}/intel/compilers_and_libraries/linux/mpi/intel64/bin/mpivars.sh release | |
| wget https://github.com/eschnett/MPIwrapper/archive/refs/tags/v${MPIWrapper}.tar.gz | |
| tar xzf v${MPIWrapper}.tar.gz | |
| cd MPIwrapper-* | |
| cmake \ | |
| -DMPIEXEC_EXECUTABLE=mpiexec \ | |
| -DCMAKE_BUILD_TYPE=Debug \ | |
| -DCMAKE_INSTALL_PREFIX=/usr/local \ | |
| . | |
| cmake --build . | |
| sudo cmake --install . | |
| env: | |
| MPIWrapper: ${{matrix.MPIWrapper}} | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| # https://discourse.julialang.org/t/recommendation-cache-julia-artifacts-in-ci-services/35484 | |
| - name: Cache artifacts | |
| uses: actions/cache@v3 | |
| env: | |
| cache-name: cache-artifacts | |
| with: | |
| path: ~/.julia/artifacts | |
| key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-test-${{ env.cache-name }}- | |
| ${{ runner.os }}-test- | |
| ${{ runner.os }}- | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| - name: use MPItrampoline_jll | |
| shell: julia --color=yes --project=test {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| using MPIPreferences | |
| MPIPreferences.use_jll_binary("MPItrampoline_jll", export_prefs=true) | |
| rm("test/Manifest.toml") | |
| # We can't use the usual actions here as we need to ensure the environment variables are set | |
| - name: "Build package" | |
| run: | | |
| source ${HOME}/intel/compilers_and_libraries/linux/mpi/intel64/bin/mpivars.sh release | |
| julia --color=yes --project -e 'using Pkg; Pkg.instantiate(verbose=true); Pkg.build(verbose=true)' | |
| - name: "Run tests" | |
| run: | | |
| source ${HOME}/intel/compilers_and_libraries/linux/mpi/intel64/bin/mpivars.sh release | |
| julia --color=yes --project -e 'using Pkg; Pkg.test()' | |
| test-spack-mvapich: | |
| timeout-minutes: 60 | |
| strategy: | |
| matrix: | |
| julia_version: | |
| - "1" | |
| fail-fast: false | |
| runs-on: ubuntu-22.04 | |
| env: | |
| JULIA_MPI_TEST_BINARY: system | |
| JULIA_MPI_TEST_EXCLUDE: test_spawn.jl | |
| MV2_SMP_USE_CMA: 0 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Cache MVAPICH | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| .ci/mvapich/opt | |
| .ci/mvapich/.spack-env | |
| key: ${{ runner.os }}-mvapich-2.3.7 | |
| - name: Install MVAPICH dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libibverbs-dev libpciaccess-dev libxml2-dev pkgconf rdma-core zlib1g-dev | |
| - name: Install MVAPICH via Spack | |
| run: | | |
| git clone -c feature.manyFiles=true --depth 1 https://github.com/spack/spack.git | |
| spack/bin/spack -e .ci/mvapich concretize -f | |
| spack/bin/spack -e .ci/mvapich install | |
| - name: Set PATH and LD_LIBRARY_PATH | |
| run: | | |
| echo "PATH=$(realpath .ci/mvapich/.spack-env/view/bin):${PATH}" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=$(realpath .ci/mvapich/.spack-env/view/lib):${LD_LIBRARY_PATH}" >> $GITHUB_ENV | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia_version }} | |
| - uses: julia-actions/cache@v1 | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(path="lib/MPIPreferences") | |
| Pkg.precompile() | |
| - name: use system MPI | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary() | |
| - uses: julia-actions/julia-runtest@latest |