Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add convergent cross sorting #370

Open
rafaqz opened this issue May 30, 2024 · 2 comments
Open

Add convergent cross sorting #370

rafaqz opened this issue May 30, 2024 · 2 comments
Labels
enhancement New feature or request

Comments

@rafaqz
Copy link

rafaqz commented May 30, 2024

Another one....

https://www.nature.com/articles/s41598-021-98864-2
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10336384/#RSOS221590C29

@rafaqz
Copy link
Author

rafaqz commented May 30, 2024

Maybe useful, but not licensed:
https://github.com/lbreston/CCS

@kahaaga kahaaga added the enhancement New feature or request label May 31, 2024
@kahaaga
Copy link
Member

kahaaga commented May 31, 2024

Looks useful, @rafaqz! From a brief glance at their supplementary information, this looks pretty straight forward to implement.

One parameter in their method is T, the fraction of pairwise distances considered. They say "Rougher signals require a larger fraction of pairwise distances to be considered because their ranks are less tightly coupled". To determine roughness, they use a measure involving the standard deviation. We should be maximally flexible, so we should implement a dispatch-based method for allowing not only standard deviation but other measures of "data spread" when calculating T.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

2 participants