From 5f12da5092f9be94ad73baf61df0c073a5635226 Mon Sep 17 00:00:00 2001
From: Abel Soares Siqueira <abel.s.siqueira@gmail.com>
Date: Fri, 22 Sep 2023 15:49:24 +0200
Subject: [PATCH 1/3] Add configuration to md link check and ignore Documenter
 (at)ref

---
 .markdown-link-config.json | 7 +++++++
 .pre-commit-config.yaml    | 2 ++
 2 files changed, 9 insertions(+)
 create mode 100644 .markdown-link-config.json

diff --git a/.markdown-link-config.json b/.markdown-link-config.json
new file mode 100644
index 00000000..de14e9ec
--- /dev/null
+++ b/.markdown-link-config.json
@@ -0,0 +1,7 @@
+{
+  "ignorePatterns": [
+    {
+      "pattern": "@ref"
+    }
+  ]
+}
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 084d359d..fd61345f 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -51,3 +51,5 @@ repos:
     rev: v3.11.2
     hooks:
       - id: markdown-link-check
+        args:
+          - --config=.markdown-link-config.json

From 37462db03f1eb21833024fa9048f1d490e783a5c Mon Sep 17 00:00:00 2001
From: Abel Soares Siqueira <abel.s.siqueira@gmail.com>
Date: Fri, 22 Sep 2023 15:49:54 +0200
Subject: [PATCH 2/3] Change md lint to fix

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index fd61345f..49f1c39c 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -28,7 +28,7 @@ repos:
   - repo: https://github.com/igorshubovych/markdownlint-cli
     rev: v0.37.0
     hooks:
-      - id: markdownlint
+      - id: markdownlint-fix
   - repo: https://github.com/citation-file-format/cffconvert
     rev: 054bda51dbe278b3e86f27c890e3f3ac877d616c
     hooks:

From f587777aef186a83644e813be1851e0a79011fe4 Mon Sep 17 00:00:00 2001
From: Abel Soares Siqueira <abel.s.siqueira@gmail.com>
Date: Fri, 22 Sep 2023 15:52:57 +0200
Subject: [PATCH 3/3] Only ignore Project.toml, not all toml

---
 copier.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/copier.yml b/copier.yml
index 73dd09c7..9118e426 100644
--- a/copier.yml
+++ b/copier.yml
@@ -62,6 +62,6 @@ _skip_if_exists:
   - "**/*.jl"
   - "!docs/make.jl"
   - "**/*.md"
-  - "**/*.toml"
+  - "**/Project.toml"
   - CITATION.cff
   - LICENSE