Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Support AutoSQL #7

Open
superbobry opened this issue Apr 4, 2015 · 2 comments
Open

Support AutoSQL #7

superbobry opened this issue Apr 4, 2015 · 2 comments

Comments

@superbobry
Copy link
Contributor

BigBed files can store extra fields in addition to the predefined BED fields. If you add extra fields to your bigBed file, you must include a .as (AutoSQL) format file describing the fields.

Motivation and details on AutoSQL are described here. At the moment we've decided to restrict big to predefined BED fields, but we'll have to deal with AutoSQL at some point.
@iromeo
Copy link
Contributor

iromeo commented Nov 9, 2017 •
edited
Loading

2017-11-09 17:35:29] BigFile [WARN] AutoSQL queries are unsupported
Logging is too aggressive here, e.g. it spoils epigenome project log file because epigenome browser opens big file on each rendering event.

I think it is better to log it as "trace" info or even switch warning off.

@superbobry
Copy link
Contributor Author

Yep, just switch it off. This AutoSQL thing is a mess, I doubt we would ever want to implement it.

iromeo added a commit that referenced this issue Nov 10, 2017
@iromeo
0.5.1 version: "AutoSQL queries are unsupported" warning turn off, se…
2d6d276 
…e issue #7
@iromeo iromeo mentioned this issue Dec 13, 2017
Closed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@iromeo @superbobry