Compilation error of v5.4.0 with GCC-13.2.0 - CastXML problem? #4911

pavelToman · 2024-10-29T09:54:54Z

Description

Hello! I am working for University Gent (UGent) and I am trying to install ITK 5.4.0 on our HPC to provide it to our researchers.
We are using EasyBuild to build and install all the software.

There is a problem with compilation of ITK 5.4.0, while ITK 5.3.0 can be build and install.

Steps to Reproduce

Configure (cmake) command seems ok, but it failed on make step:

cmake
-DCMAKE_INSTALL_PREFIX=/software/ITK/5.4.0-foss-2023b
-DCMAKE_BUILD_TYPE=Release
-DCMAKE_POSITION_INDEPENDENT_CODE=ON
-DCMAKE_VERBOSE_MAKEFILE=ON
-DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
-DPYTHON_EXECUTABLE=/software/Python/3.11.5-GCCcore-13.2.0/bin/python
-DPython3_EXECUTABLE=/software/Python/3.11.5-GCCcore-13.2.0/bin/python
-DBUILD_SHARED_LIBS=ON
-DBUILD_TESTING=OFF
-DModule_ITKReview=ON
-DModule_ITKVtkGlue=ON
-DModule_SimpleITKFilters=ON
-DITK_WRAP_PYTHON:BOOL=ON
-DPython_EXECUTABLE=/software/Python/3.11.5-GCCcore-13.2.0/bin/python
-DSWIG_EXECUTABLE=$EBROOTSWIG/bin/swig
-DSWIG_DIR=$EBROOTSWIG
-DPY_SITE_PACKAGES_PATH=/software/ITK/5.4.0-foss-2023b/lib/python3.11/site-packages
-DITK_USE_SYSTEM_CASTXML=ON
-DITK_USE_SYSTEM_DOUBLECONVERSION=ON
-DITK_USE_SYSTEM_EIGEN=ON
-DITK_USE_SYSTEM_EXPAT=ON
-DITK_USE_SYSTEM_FFTW=ON
-DITK_USE_SYSTEM_HDF5=ON
-DITK_USE_SYSTEM_JPEG=ON
-DITK_USE_SYSTEM_PNG=ON
-DITK_USE_SYSTEM_SWIG=ON
-DITK_USE_SYSTEM_TIFF=ON
-DITK_USE_SYSTEM_ZLIB=ON
/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/
-> exit 0

LC_ALL=C make -j 8
-> exit 2
Part of the error:

  Building C object Modules/ThirdParty/NrrdIO/src/NrrdIO/CMakeFiles/ITKNrrdIO.dir/accessors.c.o
  cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/NrrdIO/src/NrrdIO && /apps/gent/
  RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/gcc -DITKNrrdIO_EXPORTS -DTEEM_BUILD -DTEEM_DIO=0 -DTEEM_QNANHIBIT=1 -
  DTEEM_ZLIB=1 -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src -I/apps/gen
  t/RHEL8/cascadelake-ib/software/zlib/1.2.13-GCCcore-13.2.0/include -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b
  /easybuild_obj/Modules/ThirdParty/NrrdIO/src/NrrdIO -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modu
  les/ThirdParty/NrrdIO/src/NrrdIO -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -std=c++17   -w -fno-strict-a
  liasing -O3 -DNDEBUG -fPIC -MD -MT Modules/ThirdParty/NrrdIO/src/NrrdIO/CMakeFiles/ITKNrrdIO.dir/accessors.c.o -MF CMak
  eFiles/ITKNrrdIO.dir/accessors.c.o.d -o CMakeFiles/ITKNrrdIO.dir/accessors.c.o -c /tmp/vsc47063/easybuild/build/ITK/5.4
  .0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/NrrdIO/src/NrrdIO/accessors.c
  In file included from In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/c
  astxml_inputs/itkPyImageFilter.cxx:1:
      In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkComma
  nd.h:21:
  In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObjec
  t.h:31:
  In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLight
  Object.h:21:
  In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro
  .h:47:
  In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu
  /13.2.0/../../../../include/c++/13.2.0/string:42:
  In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu
  /13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
  In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu
  /13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
  In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu
  /13.2.0/../../../../include/c++/13.2.0/cwchar:44:
  In file included from /usr/include/wchar.h:30:
  /usr/include/bits/floatn.h:86:20: error: typedef redefinition with different types ('__float128' vs 'struct __castxml_F
  loat128_s')
  /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyCommand.cxx:1:
  In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkComma
  nd.h:21:
  In file included from    86 | typedef __float128 _Float128;
  ...
  In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu
  /13.2.0/../../../../include/c++/13.2.0/cwchar:44:
  In file included from /usr/include/wchar.h:30:
  /usr/include/bits/floatn.h:86:20: error: typedef redefinition with different types ('__float128' vs 'struct __castxml_Float128_s')
  :472:   19: note: expanded from macro '_Float128'
  86  472 | #define _Float128 __castxml_Float128
      |                   ^
  <built-in>:478:124: note: previous definition is here
  478 | typedef struct __castxml_Float128_s {   __float128 x;   operator __float128() const;   __castxml_Float128_s(__float128); } __castxml_Float128;
      |                                                                                                                            ^
  | typedef __float128 _Float128;
  ...
  In file included from /usr/include/wchar.h:30:
  In file included from /usr/include/bits/floatn.h:119:
  /usr/include/bits/floatn-common.h:214:15: error: typedef redefinition with different types ('float' vs 'struct __castxml_Float32_s')
  28
      |                   ^
  <built-in>214 | typedef float _Float32;
      |               ^
  <built-in>:478:124: note: previous definition is here
  :  468:18: note: expanded from macro '_Float32'
  478 | typedef struct __castxml_Float128_s {   __float128 x;   operator __float128() const;   __castxml_Float128_s(__float128); } __castxml_Float128;
      |                                                                                                                            ^
  468 | #define _Float32 __castxml_Float32
      |                  ^
  <built-in>:474:107: note: previous definition is here
  474 | typedef struct __castxml_Float32_In file included from s {   float x;   operator float() const;   __castxml_Float32_s(float); } __castxml_Float32;
  In file included from /usr/include/wchar.h:30:
  In file included from /usr/include/bits/floatn.h:119:
  /usr/include/bits/floatn-common.h:214:15: error: typedef redefinition with different types ('float' vs 'struct __castxml_Float32_s')
  251  214 | typedef float _Float32;
      |               ^
  <built-in> | typedef double _Float64;
      |                ^
  <built-in>:468:18: note: expanded from macro '_Float32'
  :470:18: note: expanded from macro '_Float64'
  468 | #define _Float32 __castxml_Float32
      |                  ^
  <built-in>470 | #define _Float64 __castxml_Float64
      |                  ^
  <built-in>:474:107: note: previous definition is here
  :  476:110: note: previous definition is here
  474  476 | typedef struct __castxml_Float64_s {   double x;   operator double() const;   __castxml_Float64_s(double); } __castxml_Float64;
      |                                                                                                              ^
  | typedeIn file included from f struct __castxml_Float32_s {   float x;   operator float() const;   __castxml_Float32_s(float); } __castxml_Float32;

Whole log with errors is there: https://raw.githubusercontent.com/vscentrum/vsc-software-stack/refs/heads/wip/357_Synthcity/2023b_v0.2.11_new/monai-2023b-full/log2.txt

Versions

ITK 5.4.0

Environment

RHEL 8.8, 4.18.0-477.43.1.el8_8.x86_64
GCC 13.2.0 + FlexiBLAS + FFTW + ScaLAPACK + OpenMPI
('CMake', '3.27.6'),
('Bison', '3.8.2'),
('Eigen', '3.4.0'),
('SWIG', '4.1.1'),
('Perl', '5.38.0'),
('git', '2.42.0'),
('Python', '3.11.5'),
('double-conversion', '3.3.0'),
('expat', '2.5.0'),
('HDF5', '1.14.3'),
('libjpeg-turbo', '3.0.1'),
('libpng', '1.6.40'),
('LibTIFF', '4.6.0'),
('VTK', '9.3.0'),
('zlib', '1.2.13'),
('CastXML', '0.6.5'),

Additional Information

For me it seems similar to this problem you already fix:
d027586#diff-e7b9b1d2d1251e3340d02c7aae095ff229a0490fad2ff108c71eadc011961deeR25

The text was updated successfully, but these errors were encountered:

github-actions · 2024-10-29T09:55:18Z

Thank you for contributing an issue! 🙏

Welcome to the ITK community! 🤗👋☀️

We are glad you are here and appreciate your contribution. Please keep in mind our community participation guidelines. 📜
Also, please check existing open issues and consider discussion on the ITK Discourse. 📖

This is an automatic message. Allow for time for the ITK community to be able to read the issue and comment on it.

dzenanz · 2024-10-29T13:13:20Z

Why not try the latest CastXML then? Or the bundled one, by setting -DITK_USE_SYSTEM_CASTXML=OFF?

thewtex · 2024-10-29T18:32:37Z

('CastXML', '0.6.5'),

Hi @pavelToman , does upgrading to CastXML 0.6.8 address the issue?

pavelToman · 2024-10-30T10:05:38Z

I let it build with bundled one - but it use precompiled binaries (not ideal for our system). And with bundled CastXML the errors are the same. So I try to replace it by CastXML builded on our system.
I let the version be the same as the bundled one - thought it fits best for ITK 5.4.0. But I can try to build another version of CastXML and use it.

pavelToman · 2024-10-30T10:28:05Z

I build CastXML 0.6.8 and use it as dependency of ITK 5.4.0, but the errors during make step are the same

thewtex · 2024-10-30T18:01:35Z

@pavelToman thanks for the follow-up. To help identify the issue, do you get the same error:

With EasyBuild on Ubuntu 24.04 (also has GCC 13.2, but I have not had issues although I have not used EasyBuild)
With a build on the same system outside EasyBuild

pavelToman · 2024-11-26T09:05:37Z

We have RHEL 8/9 on our HPC clusters not Ubuntu. Also I am unable to build it outside the EasyBuild on HPC clusters.

I have tried few more things:

add SWIG-4.2.1 as a dependency builded by EB.
add CXXFLAGS/CFLAGS (-U_Float128,...) to not GCC use these Floats.
This not fix my issue.
Only thing that fix it was to delete -DITK_WRAP_PYTHON:BOOL=ON. After this ITK was built/installed, but it lacks python module I need.

There are some fails in configure step:

Details - configure

-- Performing Test C_HAS_WARNING-Wno-uninitialized - Failed
-- Performing Test C_HAS_WARNING-Wno-unused-parameter - Failed
-- Performing Test C_HAS_WARNING-Wall - Failed
-- Performing Test C_HAS_WARNING-Wno-long-double - Failed
-- Performing Test C_HAS_WARNING-Wcast-align - Failed
-- Performing Test C_HAS_WARNING-Wdisabled-optimization - Failed
-- Performing Test C_HAS_WARNING-Wextra - Failed
-- Performing Test C_HAS_WARNING-Wformat_2 - Failed
-- Performing Test C_HAS_WARNING-Winvalid-pch - Failed
-- Performing Test C_HAS_WARNING-Wno-format-nonliteral - Failed
-- Performing Test C_HAS_WARNING-Wpointer-arith - Failed
-- Performing Test C_HAS_WARNING-Wshadow - Failed
-- Performing Test C_HAS_WARNING-Wunused - Failed
-- Performing Test C_HAS_WARNING-Wwrite-strings - Failed
-- Performing Test C_HAS_WARNING-Wno-strict-overflow - Failed
-- Performing Test CXX_HAS_WARNING-Wno-long-double - Failed
-- Performing Test CXX_HAS_WARNING-Wno-undefined-var-template - Failed
-- Performing Test C_HAS_WARNING-mtune_generic - Failed
-- Performing Test C_HAS_WARNING-march_corei7 - Failed
-- Performing Test CXX_HAS_DISABLE_OPTIMIZATION_FLAG - Failed
-- Performing Test VXL_HAS_DBGHELP_H - Failed
-- Performing Test VXL_HAS_ALIGNED_MALLOC - Failed
-- Performing Test VXL_HAS_MINGW_ALIGNED_MALLOC - Failed
-- Performing Test VXL_HAS_POSIX_MEMALIGN - Failed
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Performing Test GDCM_HAVE_WCHAR_IFSTREAM - Failed
-- Performing Test Iconv_IS_BUILT_IN - Failed
-- Check size of __int64 - failed
-- Performing Test H5_HAVE___TM_GMTOFF - Failed
-- Performing Test H5_HAVE_STRUCT_TIMEZONE - Failed
-- Performing Test H5_HAVE_STRUCT_VIDEOCONFIG - Failed
-- Performing Test H5_HAVE_STRUCT_TEXT_INFO - Failed
-- Check size of _Quad - failed

Whole make error about Float128 Float32 Float64 Float32x Float64x:

Details - make

[ 22%] Generating ../../../castxml_inputs/itkPyCommand.xml
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/Generators/Python/PyUtils && ../../CastXML/castxml/bin/castxml -o /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyCommand.xml --castxml-gccxml --castxml-start wrapping --castxml-cc-gnu "(" /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -O2 -ftree-vectorize -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -fno-sized-deallocation -msse2 -std=c++17 ")" -w -c @/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/.castxml.inc /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyCommand.cxx
[ 23%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_diag_matrix_fixed+double.allsizes-.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DVXL_WARN_DEPRECATED -DVXL_WARN_DEPRECATED_ONCE -Ditkvnl_EXPORTS -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_diag_matrix_fixed+double.allsizes-.cxx.o -MF CMakeFiles/itkvnl.dir/Templates/vnl_diag_matrix_fixed+double.allsizes-.cxx.o.d -o CMakeFiles/itkvnl.dir/Templates/vnl_diag_matrix_fixed+double.allsizes-.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl/Templates/vnl_diag_matrix_fixed+double.allsizes-.cxx
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyCommand.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
/usr/include/bits/floatn.h:86:20: error: typedef redefinition with different types ('__float128' vs 'struct __castxml_Float128_s')
86 | typedef __float128 _Float128;
| ^
:470:19: note: expanded from macro '_Float128'
470 | #define _Float128 __castxml_Float128
| ^
:476:124: note: previous definition is here
476 | typedef struct __castxml_Float128_s { __float128 x; operator __float128() const; __castxml_Float128_s(__float128); } __castxml_Float128;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyCommand.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:214:15: error: typedef redefinition with different types ('float' vs 'struct __castxml_Float32_s')
214 | typedef float _Float32;
| ^
:466:18: note: expanded from macro '_Float32'
466 | #define _Float32 __castxml_Float32
| ^
:472:107: note: previous definition is here
472 | typedef struct __castxml_Float32_s { float x; operator float() const; __castxml_Float32_s(float); } __castxml_Float32;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyCommand.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:251:16: error: typedef redefinition with different types ('double' vs 'struct __castxml_Float64_s')
251 | typedef double _Float64;
| ^
:468:18: note: expanded from macro '_Float64'
468 | #define _Float64 __castxml_Float64
| ^
:474:110: note: previous definition is here
474 | typedef struct __castxml_Float64_s { double x; operator double() const; __castxml_Float64_s(double); } __castxml_Float64;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyCommand.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:268:16: error: typedef redefinition with different types ('double' vs 'struct __castxml_Float32x_s')
268 | typedef double _Float32x;
| ^
:467:19: note: expanded from macro '_Float32x'
467 | #define _Float32x __castxml_Float32x
| ^
:473:112: note: previous definition is here
473 | typedef struct __castxml_Float32x_s { double x; operator double() const; __castxml_Float32x_s(double); } __castxml_Float32x;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyCommand.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:285:21: error: typedef redefinition with different types ('long double' vs 'struct __castxml_Float64x_s')
285 | typedef long double _Float64x;
| ^
:469:19: note: expanded from macro '_Float64x'
469 | #define _Float64x __castxml_Float64x
| ^
:475:127: note: previous definition is here
475 | typedef struct __castxml_Float64x_s { long double x; operator long double() const; __castxml_Float64x_s(long double); } __castxml_Float64x;
| ^
[ 23%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmItem.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DgdcmDSED_EXPORTS -DGDCM_OVERRIDE_BROKEN_IMPLEMENTATION -Dgdcm_ns=gdcmstrict -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src/itkzlib-ng -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataDictionary -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/InformationObjectDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MessageExchangeDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Utilities -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src/itkzlib-ng -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -fno-ipa-cp-clone -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmItem.cxx.o -MF CMakeFiles/gdcmDSED.dir/strict_gdcmItem.cxx.o.d -o CMakeFiles/gdcmDSED.dir/strict_gdcmItem.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/strict_gdcmItem.cxx
[ 23%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmMediaStorage.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DgdcmDSED_EXPORTS -DGDCM_OVERRIDE_BROKEN_IMPLEMENTATION -Dgdcm_ns=gdcmstrict -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src/itkzlib-ng -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataDictionary -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/InformationObjectDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MessageExchangeDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Utilities -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src/itkzlib-ng -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -fno-ipa-cp-clone -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmMediaStorage.cxx.o -MF CMakeFiles/gdcmDSED.dir/strict_gdcmMediaStorage.cxx.o.d -o CMakeFiles/gdcmDSED.dir/strict_gdcmMediaStorage.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/strict_gdcmMediaStorage.cxx
[ 23%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmPrivateTag.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DgdcmDSED_EXPORTS -DGDCM_OVERRIDE_BROKEN_IMPLEMENTATION -Dgdcm_ns=gdcmstrict -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src/itkzlib-ng -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataDictionary -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/InformationObjectDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MessageExchangeDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Utilities -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src/itkzlib-ng -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -fno-ipa-cp-clone -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmPrivateTag.cxx.o -MF CMakeFiles/gdcmDSED.dir/strict_gdcmPrivateTag.cxx.o.d -o CMakeFiles/gdcmDSED.dir/strict_gdcmPrivateTag.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/strict_gdcmPrivateTag.cxx
[ 23%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_diag_matrix_fixed+float.allsizes-.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DVXL_WARN_DEPRECATED -DVXL_WARN_DEPRECATED_ONCE -Ditkvnl_EXPORTS -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_diag_matrix_fixed+float.allsizes-.cxx.o -MF CMakeFiles/itkvnl.dir/Templates/vnl_diag_matrix_fixed+float.allsizes-.cxx.o.d -o CMakeFiles/itkvnl.dir/Templates/vnl_diag_matrix_fixed+float.allsizes-.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl/Templates/vnl_diag_matrix_fixed+float.allsizes-.cxx
[ 23%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmReader.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DgdcmDSED_EXPORTS -DGDCM_OVERRIDE_BROKEN_IMPLEMENTATION -Dgdcm_ns=gdcmstrict -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src/itkzlib-ng -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataDictionary -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/InformationObjectDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MessageExchangeDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Utilities -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src/itkzlib-ng -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -fno-ipa-cp-clone -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmReader.cxx.o -MF CMakeFiles/gdcmDSED.dir/strict_gdcmReader.cxx.o.d -o CMakeFiles/gdcmDSED.dir/strict_gdcmReader.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/strict_gdcmReader.cxx
[ 23%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+double-.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DVXL_WARN_DEPRECATED -DVXL_WARN_DEPRECATED_ONCE -Ditkvnl_EXPORTS -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+double-.cxx.o -MF CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+double-.cxx.o.d -o CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+double-.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl/Templates/vnl_file_matrix+double-.cxx
[ 23%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmSequenceOfFragments.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DgdcmDSED_EXPORTS -DGDCM_OVERRIDE_BROKEN_IMPLEMENTATION -Dgdcm_ns=gdcmstrict -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src/itkzlib-ng -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataDictionary -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/InformationObjectDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MessageExchangeDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Utilities -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src/itkzlib-ng -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -fno-ipa-cp-clone -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmSequenceOfFragments.cxx.o -MF CMakeFiles/gdcmDSED.dir/strict_gdcmSequenceOfFragments.cxx.o.d -o CMakeFiles/gdcmDSED.dir/strict_gdcmSequenceOfFragments.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/strict_gdcmSequenceOfFragments.cxx
[ 23%] Generating ../../../castxml_inputs/itkPyImageFilter.xml
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/Generators/Python/PyUtils && ../../CastXML/castxml/bin/castxml -o /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyImageFilter.xml --castxml-gccxml --castxml-start wrapping --castxml-cc-gnu "(" /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -O2 -ftree-vectorize -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -fno-sized-deallocation -msse2 -std=c++17 ")" -w -c @/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/.castxml.inc /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyImageFilter.cxx
[ 23%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+float-.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DVXL_WARN_DEPRECATED -DVXL_WARN_DEPRECATED_ONCE -Ditkvnl_EXPORTS -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+float-.cxx.o -MF CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+float-.cxx.o.d -o CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+float-.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl/Templates/vnl_file_matrix+float-.cxx
make -f Wrapping/Modules/ITKCommon/CMakeFiles/ITKCommonCastXML.dir/build.make Wrapping/Modules/ITKCommon/CMakeFiles/ITKCommonCastXML.dir/depend
make[2]: Entering directory '/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj'
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj && /kyukon/home/apps/RHEL8/cascadelake-ib/software/CMake/3.27.6-GCCcore-13.2.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0 /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/wrapping /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/Modules/ITKCommon /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/Modules/ITKCommon/CMakeFiles/ITKCommonCastXML.dir/DependInfo.cmake "--color="
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyImageFilter.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
/usr/include/bits/floatn.h:86:20: error: typedef redefinition with different types ('__float128' vs 'struct __castxml_Float128_s')
86 | typedef __float128 _Float128;
| ^
:470:19: note: expanded from macro '_Float128'
470 | #define _Float128 __castxml_Float128
| ^
:476:124: note: previous definition is here
476 | typedef struct __castxml_Float128_s { __float128 x; operator __float128() const; __castxml_Float128_s(__float128); } __castxml_Float128;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyImageFilter.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:214:15: error: typedef redefinition with different types ('float' vs 'struct __castxml_Float32_s')
214 | typedef float _Float32;
| ^
:466:18: note: expanded from macro '_Float32'
466 | #define _Float32 __castxml_Float32
| ^
:472:107: note: previous definition is here
472 | typedef struct __castxml_Float32_s { float x; operator float() const; __castxml_Float32_s(float); } __castxml_Float32;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyImageFilter.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:251:16: error: typedef redefinition with different types ('double' vs 'struct __castxml_Float64_s')
251 | typedef double _Float64;
| ^
:468:18: note: expanded from macro '_Float64'
468 | #define _Float64 __castxml_Float64
| ^
:474:110: note: previous definition is here
474 | typedef struct __castxml_Float64_s { double x; operator double() const; __castxml_Float64_s(double); } __castxml_Float64;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyImageFilter.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:268:16: error: typedef redefinition with different types ('double' vs 'struct __castxml_Float32x_s')
268 | typedef double _Float32x;
| ^
:467:19: note: expanded from macro '_Float32x'
467 | #define _Float32x __castxml_Float32x
| ^
:473:112: note: previous definition is here
473 | typedef struct __castxml_Float32x_s { double x; operator double() const; __castxml_Float32x_s(double); } __castxml_Float32x;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkPyImageFilter.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:285:21: error: typedef redefinition with different types ('long double' vs 'struct __castxml_Float64x_s')
285 | typedef long double _Float64x;
| ^
:469:19: note: expanded from macro '_Float64x'
469 | #define _Float64x __castxml_Float64x
| ^
:475:127: note: previous definition is here
475 | typedef struct __castxml_Float64x_s { long double x; operator long double() const; __castxml_Float64x_s(long double); } __castxml_Float64x;
| ^
[ 23%] Building CXX object Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmSequenceOfItems.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DgdcmDSED_EXPORTS -DGDCM_OVERRIDE_BROKEN_IMPLEMENTATION -Dgdcm_ns=gdcmstrict -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/Expat/src/expat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/ZLIB/src/itkzlib-ng -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MediaStorageAndFileFormat -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataDictionary -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/Common -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/InformationObjectDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/MessageExchangeDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/GDCM/src/gdcm/Utilities -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/ZLIB/src/itkzlib-ng -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -fno-ipa-cp-clone -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/CMakeFiles/gdcmDSED.dir/strict_gdcmSequenceOfItems.cxx.o -MF CMakeFiles/gdcmDSED.dir/strict_gdcmSequenceOfItems.cxx.o.d -o CMakeFiles/gdcmDSED.dir/strict_gdcmSequenceOfItems.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/GDCM/src/gdcm/Source/DataStructureAndEncodingDefinition/strict_gdcmSequenceOfItems.cxx
make[2]: Leaving directory '/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj'
make -f Wrapping/Modules/ITKCommon/CMakeFiles/ITKCommonCastXML.dir/build.make Wrapping/Modules/ITKCommon/CMakeFiles/ITKCommonCastXML.dir/build
make[2]: Entering directory '/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj'
[ 23%] Generating ../../castxml_inputs/itkFixedArray.xml
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/Modules/ITKCommon && ../../Generators/CastXML/castxml/bin/castxml -o /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkFixedArray.xml --castxml-gccxml --castxml-start wrapping --castxml-cc-gnu "(" /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -O2 -ftree-vectorize -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -fno-sized-deallocation -msse2 -std=c++17 ")" -w -c @/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/.castxml.inc /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkFixedArray.cxx
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkFixedArray.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
/usr/include/bits/floatn.h:86:20: error: typedef redefinition with different types ('__float128' vs 'struct __castxml_Float128_s')
86 | typedef __float128 _Float128;
| ^
:470:19: note: expanded from macro '_Float128'
470 | #define _Float128 __castxml_Float128
| ^
:476:124: note: previous definition is here
476 | typedef struct __castxml_Float128_s { __float128 x; operator __float128() const; __castxml_Float128_s(__float128); } __castxml_Float128;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkFixedArray.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:214:15: error: typedef redefinition with different types ('float' vs 'struct __castxml_Float32_s')
214 | typedef float _Float32;
| ^
:466:18: note: expanded from macro '_Float32'
466 | #define _Float32 __castxml_Float32
| ^
:472:107: note: previous definition is here
472 | typedef struct __castxml_Float32_s { float x; operator float() const; __castxml_Float32_s(float); } __castxml_Float32;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkFixedArray.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:251:16: error: typedef redefinition with different types ('double' vs 'struct __castxml_Float64_s')
251 | typedef double _Float64;
| ^
:468:18: note: expanded from macro '_Float64'
468 | #define _Float64 __castxml_Float64
| ^
:474:110: note: previous definition is here
474 | typedef struct __castxml_Float64_s { double x; operator double() const; __castxml_Float64_s(double); } __castxml_Float64;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkFixedArray.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:268:16: error: typedef redefinition with different types ('double' vs 'struct __castxml_Float32x_s')
268 | typedef double _Float32x;
| ^
:467:19: note: expanded from macro '_Float32x'
467 | #define _Float32x __castxml_Float32x
| ^
:473:112: note: previous definition is here
473 | typedef struct __castxml_Float32x_s { double x; operator double() const; __castxml_Float32x_s(double); } __castxml_Float32x;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkFixedArray.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:285:21: error: typedef redefinition with different types ('long double' vs 'struct __castxml_Float64x_s')
285 | typedef long double _Float64x;
| ^
:469:19: note: expanded from macro '_Float64x'
469 | #define _Float64x __castxml_Float64x
| ^
:475:127: note: previous definition is here
475 | typedef struct __castxml_Float64x_s { long double x; operator long double() const; __castxml_Float64x_s(long double); } __castxml_Float64x;
| ^
[ 23%] Generating ../../castxml_inputs/itkVector.xml
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/Modules/ITKCommon && ../../Generators/CastXML/castxml/bin/castxml -o /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkVector.xml --castxml-gccxml --castxml-start wrapping --castxml-cc-gnu "(" /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -O2 -ftree-vectorize -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -fno-sized-deallocation -msse2 -std=c++17 ")" -w -c @/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/.castxml.inc /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkVector.cxx
[ 23%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+long_double-.cxx.o
cd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DVXL_WARN_DEPRECATED -DVXL_WARN_DEPRECATED_ONCE -Ditkvnl_EXPORTS -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+long_double-.cxx.o -MF CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+long_double-.cxx.o.d -o CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+long_double-.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl/Templates/vnl_file_matrix+long_double-.cxx
5 errors generated.
make[2]: *** [Wrapping/Generators/Python/PyUtils/CMakeFiles/ITKPyUtilsCastXML.dir/build.make:78: Wrapping/castxml_inputs/itkPyCommand.xml] Error 1
make[2]: *** Waiting for unfinished jobs....
[ 23%] Building CXX object Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+vnl_rational-.cxx.o
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkVector.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
/usr/include/bits/floatn.h:86:20: error: typedef redefinition with different types ('__float128' vs 'struct __castxml_Float128_s')
86 | typedef __float128 _Float128;
| ^
:470:19: note: expanded from macro '_Float128'
470 | #define _Float128 __castxml_Float128
| ^
:476:124: note: previous definition is here
476 | typedef struct __castxml_Float128_s { __flocd /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl && /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/g++ -DVXL_WARN_DEPRECATED -DVXL_WARN_DEPRECATED_ONCE -Ditkvnl_EXPORTS -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/v3p/netlib -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/vcl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl -I/tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Modules/ThirdParty/VNL/src/vxl/core/vnl -O2 -ftree-vectorize -march=native -fno-math-errno -U_Float128 -U_Float32 -U_Float64 -U_Float32x -U_Float64x -mtune=generic -march=corei7 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wctad-maybe-unsupported -Wstrict-null-sentinel -fno-sized-deallocation -msse2 -w -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT Modules/ThirdParty/VNL/src/vxl/core/vnl/CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+vnl_rational-.cxx.o -MF CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+vnl_rational-.cxx.o.d -o CMakeFiles/itkvnl.dir/Templates/vnl_file_matrix+vnl_rational-.cxx.o -c /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/ThirdParty/VNL/src/vxl/core/vnl/Templates/vnl_file_matrix+vnl_rational-.cxx
at128 x; operator __float128() const; __castxml_Float128_s(__float128); } __castxml_Float128;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkVector.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:214:15: error: typedef redefinition with different types ('float' vs 'struct __castxml_Float32_s')
214 | typedef float _Float32;
| ^
:466:18: note: expanded from macro '_Float32'
466 | #define _Float32 __castxml_Float32
| ^
:472:107: note: previous definition is here
472 | typedef struct __castxml_Float32_s { float x; operator float() const; __castxml_Float32_s(float); } __castxml_Float32;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkVector.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:251:16: error: typedef redefinition with different types ('double' vs 'struct __castxml_Float64_s')
251 | typedef double _Float64;
| ^
:468:18: note: expanded from macro '_Float64'
468 | #define _Float64 __castxml_Float64
| ^
:474:110: note: previous definition is here
474 | typedef struct __castxml_Float64_s { double x; operator double() const; __castxml_Float64_s(double); } __castxml_Float64;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkVector.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:268:16: error: typedef redefinition with different types ('double' vs 'struct __castxml_Float32x_s')
268 | typedef double _Float32x;
| ^
:467:19: note: expanded from macro '_Float32x'
467 | #define _Float32x __castxml_Float32x
| ^
:473:112: note: previous definition is here
473 | typedef struct __castxml_Float32x_s { double x; operator double() const; __castxml_Float32x_s(double); } __castxml_Float32x;
| ^
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/easybuild_obj/Wrapping/castxml_inputs/itkVector.cxx:1:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkCommand.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkObject.h:31:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkLightObject.h:21:
In file included from /tmp/vsc47063/easybuild/build/ITK/5.4.0/foss-2023b/ITK-5.4.0/Modules/Core/Common/include/itkMacro.h:47:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/string:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/char_traits.h:42:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/bits/postypes.h:40:
In file included from /kyukon/home/apps/RHEL8/cascadelake-ib/software/GCCcore/13.2.0/bin/../lib/gcc/x86_64-pc-linux-gnu/13.2.0/../../../../include/c++/13.2.0/cwchar:44:
In file included from /usr/include/wchar.h:30:
In file included from /usr/include/bits/floatn.h:119:
/usr/include/bits/floatn-common.h:285:21: error: typedef redefinition with different types ('long double' vs 'struct __castxml_Float64x_s')
285 | typedef long double _Float64x;
| ^
:469:19: note: expanded from macro '_Float64x'
469 | #define _Float64x __castxml_Float64x
| ^
:475:127: note: previous definition is here
475 | typedef struct __castxml_Float64x_s { long double x; operator long double() const; __castxml_Float64x_s(long double); } __castxml_Float64x;
|

pavelToman · 2024-11-26T10:59:21Z

Since the non-system CastXML does not work, I tried to build/install CastXML-0.6.8 either with cstd c++11 and gnu++14 to avoid this https://github.com/CastXML/CastXML/blob/v0.6.8/src/RunClang.cxx#L443, but there is still the same error.

dzenanz · 2024-11-26T18:43:44Z

@bradking do you have some suggestions?

bradking · 2024-11-26T19:22:33Z

@pavelToman against what version of LLVM/Clang are you building CastXML?

pavelToman · 2024-11-27T08:54:56Z

The version of Clang is 17.0.6. I have already try to change GCC std to c++11, c++14, gnu++11 and gnu++14, when building CastXML, but nothing from this helps.

bradking · 2024-11-27T15:56:09Z

CastXML is being told to simulate GCC 13, which has builtin _Float## types. Since its internal LLVM/Clang doesn't have those types, CastXML approximates them. This was needed for issue CastXML/CastXML#251 after glibc commit 3e5760fcb4 taught glibc 2.37 and above to expect GCC 13+ to have builtin _Float## types.

The error occurs in glibc's /usr/include/bits/floatn-common.h because RHEL 8.8 has an older glibc version and does not backport the change from glibc 2.37. Somehow the gcc-toolset-13 package's g++ 13.3.1, which has builtin _Float## types too, manages to tolerate the duplicates in glibc's headers. CastXML's internal LLVM/Clang doesn't tolerate them since the conflict comes from CastXML's approximation of the builtin _Float## types.

In summary, CastXML's fix for gcc 13+ with glibc 2.37+ breaks its support for gcc 13+ with glibc < 2.37. I need to think about how to deal with this.

bradking · 2024-11-27T18:23:28Z

CastXML/CastXML#271 fixes this by reading bits/floatn-common.h and checking whether or not it contains the pre-2.37 condition.

I've released CastXML 0.6.9 with the fix.

bradking · 2024-11-27T19:10:22Z

During this investigation I found another problem with simulating GCC 13 on RHEL that I'd meant to fix too. See CastXML/CastXML#272.

I've released CastXML 0.6.10 for that.

pavelToman · 2024-11-28T11:37:05Z

Great!
It seems you fix it, thank you very much!
I build and use CastXML-0.6.10 and the Floats errors are gone 👍

pavelToman added the type:Bug Inconsistencies or issues which will cause an incorrect result under some or all circumstances label Oct 29, 2024

pavelToman mentioned this issue Oct 29, 2024

Synthcity vscentrum/vsc-software-stack#357

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dzenanz closed this as completed Nov 28, 2024

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Compilation error of v5.4.0 with GCC-13.2.0 - CastXML problem? #4911

Compilation error of v5.4.0 with GCC-13.2.0 - CastXML problem? #4911

pavelToman commented Oct 29, 2024 •

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github-actions bot commented Oct 29, 2024

dzenanz commented Oct 29, 2024

thewtex commented Oct 29, 2024

pavelToman commented Oct 30, 2024 •

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pavelToman commented Nov 28, 2024

Compilation error of v5.4.0 with GCC-13.2.0 - CastXML problem? #4911

Compilation error of v5.4.0 with GCC-13.2.0 - CastXML problem? #4911

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pavelToman commented Oct 29, 2024 • edited Loading

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