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subject-template.xml
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subject-template.xml
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<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="#odml_local_style"?>
<!DOCTYPE odML [ <!ATTLIST xsl:stylesheet id ID #REQUIRED> ]>
<odML version="1.1">
<xsl:stylesheet id="odml_local_style" version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:fn="http://www.w3.org/2005/02/xpath-functions" xmlns:odml="http://www.g-node.org/odml"><xsl:template match="odML"><xsl:variable name="repository" select="repository"/><html><head><meta charset="utf-8" /><title>odML | The Open metaData Markup Language</title><meta name="description" content="Markup language for the storage of scientific metadata" /></head><style>article,aside,details,figcaption,figure,footer,header,hgroup,nav,sec,summary{display:block}audio,canvas,video{display:inline-block;*display:inline;*zoom:1}audio:not([controls]){display:none}[hidden]{display:none}html{font-size:100%;-webkit-text-size-adjust:100%;-ms-text-size-adjust:100%}button,html,input,select,textarea{font-family:sans-serif}body{margin:0}a:focus{outline:thin dotted}a:active,a:hover{outline:0}h1{font-size:2em;margin:0.67em 0}h2{font-size:1.5em;margin:0.83em 0}h3{font-size:1.17em;margin:1em 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</style><body><header><h1><a class="white" href="https://templates.g-node.org/templates.xml">odML metadata document</a></h1></header><div class="navWrapper"><navigationContainer><div id="navigationContainer"><hr class="fatline" /><p><h2>Document info</h2><b>Author: </b><xsl:if test="author"><xsl:value-of select="author"/></xsl:if><br/><b>Date: </b><xsl:if test="date"><xsl:value-of select="date"/></xsl:if><br/><b>Version: </b><xsl:if test="version"><xsl:value-of select="version"/></xsl:if><br/><b>Repository: </b><xsl:if test="repository"><xsl:value-of select="repository"/></xsl:if><br/></p><hr class="fatline" /><h2>Structure</h2><font size ="-1" ><xsl:if test="section"><xsl:for-each select="section"><xsl:call-template name="sectionTemplate"><xsl:with-param name="navigation">1</xsl:with-param><xsl:with-param name="anchorBase">Sec</xsl:with-param><xsl:with-param name="url" select="$repository"/></xsl:call-template></xsl:for-each></xsl:if></font><br/></div><div id="contentContainer"><hr class="fatline" /><h2>Content</h2><xsl:if test="section"><xsl:for-each select="section"><xsl:call-template name="sectionTemplate"><xsl:with-param name="navigation">0</xsl:with-param><xsl:with-param name="anchorBase">Sec</xsl:with-param><xsl:with-param name="url" select="$repository"/></xsl:call-template></xsl:for-each></xsl:if></div></navigationContainer></div></body></html></xsl:template><xsl:template name="sectionTemplate" match="section"><xsl:param name="navigation"/><xsl:param name="anchorBase"/><xsl:param name="url"/><xsl:variable name="anchorName" select="concat($anchorBase,position())"/><xsl:variable name="repository"><xsl:choose><xsl:when test="repository"><xsl:value-of select ="repository"/></xsl:when><xsl:otherwise><xsl:value-of select ="$url"/></xsl:otherwise></xsl:choose></xsl:variable><xsl:choose><xsl:when test="$navigation = 1"><ol class="nested"><font size="normal"><a href="#{$anchorName}"><xsl:value-of select="name"/> (type: <xsl:value-of select="type"/>)</a></font><xsl:if test="section"><xsl:for-each select="section"><xsl:call-template name="sectionTemplate"><xsl:with-param name="navigation" select="$navigation"/><xsl:with-param name="anchorBase" select="concat($anchorName,'SubSec')"/><xsl:with-param name="url" select="$repository"/></xsl:call-template></xsl:for-each></xsl:if></ol></xsl:when><xsl:otherwise><a name="{$anchorName}"><h3><xsl:value-of select="name"/> Section</h3></a><p><b>Type: </b><xsl:value-of select="type"/><br/><xsl:choose><xsl:when test ="repository"><b>Repository: </b><xsl:value-of select="repository"/><br/></xsl:when><xsl:otherwise><b>Repository: </b><xsl:value-of select="$repository"/><br/></xsl:otherwise></xsl:choose><b>Link: </b><xsl:if test="link"><xsl:value-of select="link"/></xsl:if><br/><b>Include:</b><xsl:if test="include"><font color="red"><xsl:value-of select="include"/></font></xsl:if><br/><b>Definition: </b><xsl:if test="definition"><xsl:value-of select="definition"/></xsl:if><br/></p><xsl:if test="property"><table border="1" rules="rows" width="100%"><font size="-1"><tr bgcolor="#336699" align="left" valign="middle"><th><font size="+1" color="white"><b>Name</b></font></th><th><font size="+1" color="white"><b>Value</b></font></th><th><font size="+1" color="white"><b>Unit</b></font></th><th><font size="+1" color="white"><b>Type</b></font></th><th><font size="+1" color="white"><b>Uncertainty</b></font></th><th><font size="+1" color="white"><b>Definition</b></font></th><th><font size="+1" color="white"><b>Dependency</b></font></th><th><font size="+1" color="white"><b>Dependency Value</b></font></th></tr><xsl:for-each select="property"><xsl:variable name="anchor"><xsl:value-of select ="name"/></xsl:variable><tr><td width="15%"><a name="{$anchor}"/><p><xsl:value-of select="name"/></p></td><td width="10%"><p><xsl:value-of select="value"/></p></td><td width="5%"><p><xsl:value-of select="unit"/><br/></p></td><td width="5%"><p><xsl:value-of select="type"/></p></td><td width="5%"><p><xsl:value-of select="uncertainty"/><br/></p></td><td width="22.5%"><p><xsl:value-of select="definition"/></p></td><td width="5%"><p><xsl:value-of select="dependency"/></p></td><td width="5%"><p><xsl:value-of select="dependencyValue"/></p></td></tr></xsl:for-each></font></table></xsl:if><a href="#top"><tiny>top</tiny></a><hr class="thinline" /><xsl:if test="section"><xsl:for-each select="section"><xsl:call-template name="sectionTemplate"><xsl:with-param name="navigation" select="$navigation"/><xsl:with-param name="anchorBase" select="concat($anchorName,'SubSec')"/><xsl:with-param name="url" select="$repository"/></xsl:call-template></xsl:for-each></xsl:if></xsl:otherwise></xsl:choose></xsl:template>
</xsl:stylesheet>
<id>441070ce-ba26-4759-bb29-58ddfba17737</id>
<version>1.0</version>
<author>Reema Gupta</author>
<section>
<id>8eb9dbea-3d62-42c4-aa4e-5c13f93b0baa</id>
<type>n.s.</type>
<name>subject</name>
<definition>Subject-template template schema generated by the CEDAR Template Editor 2.6.56</definition>
<section>
<id>94d00140-56bd-4fd1-b4de-f44ddb3d5a5f</id>
<type>n.s.</type>
<name>in2pb-header</name>
<definition>Header to be used for metadata templates created for In2PB projects.</definition>
<property>
<id>cb5fa390-c2ef-468c-8fd3-16875206d913</id>
<name>in2pb-header</name>
<value></value>
<definition>Header to be used for metadata templates created for In2PB projects.</definition>
</property>
</section>
<section>
<id>4337ed2b-e317-4091-ab18-4ed4d47a82c6</id>
<type>n.s.</type>
<name>subject-header</name>
<definition>Header with instructions for the subject metadata.</definition>
<property>
<id>0d8b1622-3d13-4687-b78d-469c481a299c</id>
<name>subject-header</name>
<value></value>
<definition>Header with instructions for the subject metadata.</definition>
</property>
</section>
<section>
<id>53713f71-099f-43e3-b630-99ef25e77fa5</id>
<type>n.s.</type>
<name>subject-general-element</name>
<definition>Metadata relating to the subject of the experiment.</definition>
<property>
<id>ec881fed-406b-4758-a76e-0d439914bc6a</id>
<name>subjectID</name>
<value></value>
<definition>Unique identifier for the subject.</definition>
</property>
<property>
<id>0be3e0ac-f0f3-477f-ad21-b0c0411847e0</id>
<name>subjectSpecies</name>
<value></value>
<definition>Binomial species name from NCBI taxonomy</definition>
</property>
<property>
<id>e438afca-5a4b-49cd-93e8-5c98f1240efc</id>
<name>subejctSpeciesStrain</name>
<value></value>
<definition>String value indicating the strain of the species, for example: C57BL/6J.</definition>
</property>
<property>
<id>4c10064f-e488-420e-a95b-520e2a6668e4</id>
<name>subjectSpeciesStrainRRID</name>
<value></value>
<definition>Research resource identifier (RRID) of the strain of the species.</definition>
</property>
<property>
<id>bcdbd40e-8e31-4ff8-8c17-b8befaf739ff</id>
<name>subjectTrivialName</name>
<value></value>
<definition>Commonly used species name.</definition>
</property>
<property>
<id>efd9a039-d689-434b-b679-dfa319c3edd3</id>
<name>subjectAbbreviatedID</name>
<value></value>
<definition>Abbreviated identifier of the subject, for instance, identifier used in file names.</definition>
</property>
<property>
<id>a051255b-1183-49b3-be0c-2aaa038f5830</id>
<name>genotypic sex</name>
<value></value>
<definition>Sex of the subject being defined.</definition>
</property>
<property>
<id>e1ca6891-ee8b-4c56-9bd5-16764ea225db</id>
<name>subjectBirthDate</name>
<value></value>
<definition>Birthdate of the subject, if available.</definition>
</property>
<property>
<id>d845087a-7d36-49af-9417-96f2ac108803</id>
<name>subjectAge</name>
<value></value>
<definition>Age of the participant at time of begining of recording (first data point recorded) in years.</definition>
</property>
<property>
<id>a6fd1c24-6b8f-477f-ac1e-37e8052d524c</id>
<name>subjectCharacter</name>
<value></value>
<definition>Remarks on the general characteristics of the subject, if any.</definition>
</property>
</section>
<section>
<id>8ec1c87c-0bc0-475e-9d9d-b103c11ea7f7</id>
<type>n.s.</type>
<name>subject-training-element</name>
<definition>Information on training of the animal.</definition>
<property>
<id>b73dbeec-681d-4875-9e5e-9dfdcd902db9</id>
<name>subjectID</name>
<value></value>
<definition>Identifier of the subject who was trained.</definition>
</property>
<property>
<id>c1cb556f-64e4-45c4-bf39-a7e0078563ae</id>
<name>trainingType</name>
<value></value>
<definition>Type of training being described.</definition>
</property>
<property>
<id>37d82f37-f3aa-48af-8994-1e8a0ac99bbc</id>
<name>trainingStartDate</name>
<value></value>
<definition>Date of the start of the training.</definition>
</property>
<property>
<id>67961f64-b0f9-45fc-80a7-7cd7edceaf06</id>
<name>trainingEndDate</name>
<value></value>
<definition>Date of the end of the training.</definition>
</property>
<property>
<id>1b1a7c57-bd98-4433-89a4-1e4342fd114f</id>
<name>trainingCoaches</name>
<value></value>
<definition>List of people responsible for training of the subject.</definition>
</property>
<property>
<id>f4abb9c9-b19d-4033-9e7f-b2bf179dcc67</id>
<name>trainingComments</name>
<value></value>
<definition>Remarks on the training procedure.</definition>
</property>
</section>
<section>
<id>4acd9931-7268-47e7-aad5-8508391f0f3d</id>
<type>n.s.</type>
<name>subject-surgery-element</name>
<definition>Information on surgeries performed on of the animal.</definition>
<property>
<id>bcb958dc-a298-484d-a512-cf293c8065f2</id>
<name>subjectID</name>
<value></value>
<definition>Identifier of the subject on which the surgery was performed.</definition>
</property>
<property>
<id>65fd2947-1445-40d1-a901-94a3e324cc7d</id>
<name>surgeryType</name>
<value></value>
<definition>Type of the surgery performed.</definition>
</property>
<property>
<id>e66ac267-8d7e-4e88-8c67-e6c0f34ad9f6</id>
<name>subjectWeight</name>
<value></value>
<definition>Weight of the subject at the start of surgery in kilograms.</definition>
</property>
<property>
<id>fbe81d38-af2a-47e5-bef8-dbfa1488f028</id>
<name>surgeryDuration</name>
<value></value>
<definition>Duration of the surgery in hours.</definition>
</property>
<property>
<id>ee394fa3-2058-422b-8cdd-9af0548845cc</id>
<name>surgeonNames</name>
<value></value>
<definition>List of people responsible for the surgery.</definition>
</property>
<property>
<id>39fd501f-0fb3-4d01-a783-2e9880eb092b</id>
<name>surgeryHemisphere</name>
<value></value>
<definition>Hemisphere on which the surgery was performed.</definition>
</property>
<property>
<id>92e49673-b281-4efe-bc54-460b065c118e</id>
<name>surgeryAnatomicalLocation</name>
<value></value>
<definition>List of anatomical locations of the surgery.</definition>
</property>
<property>
<id>f872bf86-6f98-44bb-855b-24c8420195cd</id>
<name>surgeryComments</name>
<value></value>
<definition>Remarks on the surgery.</definition>
</property>
</section>
<section>
<id>c60709b5-89e5-4204-9852-67fb63bd00b5</id>
<type>n.s.</type>
<name>free-text-field</name>
<definition>A free text element to allow the user to provide any additional information.</definition>
</section>
<property>
<id>e99ee529-07b8-4404-b725-39020f2b6cb2</id>
<name>free-text-field</name>
<value></value>
<definition>A free text element to allow the user to provide any additional information.</definition>
</property>
</section>
</odML>