Time (UTC) | Programme |
---|---|
11.00 - 11.10 | Welcome Address and Presentation of Tutorial Agenda |
11.10 - 11.20 | 1. A few simple rules for easier workflow maintenance and reuse |
11.20 - 11.30 | 2. A quck run of scRNA-seq workflow |
11.30 - 11.40 | 3. Begin with environment setup - Conda |
11:40 - 12.00 | 4. Dockerfile for each process - Docker |
12:00 - 12:20 | 5. GitHub Actions to build, test and deposit container images |
12.20 - 12.30 | 6. Zenodo for DOIs and Genomic Summary and other Data |
12.30 - 12.45 | ☕ Short break - Stretch your legs! (15 minutes) ☕ |
12.45 - 13.00 | 7. Stitching processes with a standard workflow - Nextflow |
13.00 - 13.20 | 8. Stitching processes with other workflow languages, such as Common Workflow Language |
13.50 - 14.00 | Closing remarks and future directions |