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Elements-of-Style-Reproducible-Tutorial-Agenda.md

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Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial





Agenda for the day:

Time (UTC) Programme
11.00 - 11.10 Welcome Address and Presentation of Tutorial Agenda
11.10 - 11.20 1. A few simple rules for easier workflow maintenance and reuse
11.20 - 11.30 2. A quck run of scRNA-seq workflow
11.30 - 11.40 3. Begin with environment setup - Conda
11:40 - 12.00 4. Dockerfile for each process - Docker
12:00 - 12:20 5. GitHub Actions to build, test and deposit container images
12.20 - 12.30 6. Zenodo for DOIs and Genomic Summary and other Data
12.30 - 12.45 Short break - Stretch your legs! (15 minutes)
12.45 - 13.00 7. Stitching processes with a standard workflow - Nextflow
13.00 - 13.20 8. Stitching processes with other workflow languages, such as Common Workflow Language
13.50 - 14.00 Closing remarks and future directions