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./docs/fmri.example.md:cmdargs <- c("-m","mask_4mm.nii.gz", "--set1", "setfilenames1.txt",
./docs/fmri.example.md:These arguments specify a mask (`mask_4mm.nii.gz`), which has a value
./example.rawfmri/readargs.R:cmdargs <- c("-m","mask_4mm.nii.gz", "--set1", "setfilenames1.txt",
to not use the .gz extension or gzip the file example.rawfmri/mask_4mm.nii so that it is there. Currently, running npoint from example.rawfmri results in this warning.
$ npoint
Reading 2 data sets.
Allocating memory for data.
Reading in data.
++Working on dataset 1
++Working on dataset 2
used (Mb) gc trigger (Mb) max used (Mb)
Ncells 328797 17.6 627465 33.6 627465 33.6
Vcells 74065756 565.1 168635876 1286.6 165340010 1261.5
no. of vertices 30546
size 3054
no. of jobs 10
Warning message:
In normalizePath(args$mask) :
path[1]="mask_4mm.nii.gz": No such file or directory
The text was updated successfully, but these errors were encountered:
I believe you want to either modify these lines
to not use the
.gz
extension or gzip the fileexample.rawfmri/mask_4mm.nii
so that it is there. Currently, runningnpoint
fromexample.rawfmri
results in this warning.The text was updated successfully, but these errors were encountered: