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Library spectrum USI column in SME table #224

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YasinEl opened this issue Sep 10, 2024 · 0 comments
Open

Library spectrum USI column in SME table #224

YasinEl opened this issue Sep 10, 2024 · 0 comments
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@YasinEl
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YasinEl commented Sep 10, 2024

Hello, and thank you for maintaining this tool!

We propose adding a “query_spectrum”, and “Library spectrum USI” column to the SME table. The “query_spectrum” should be populated as described in #223 with e.g. ms_run[x]:123 with 123 being the scan ID in the mzML file or spectral_representation[x]:123 when using a spectra collection as proposed in #222.

“Library spectrum USI” should be an USI to an annotated spectrum (e.g. a GNPS library spectrum such as mzspec:GNPS:GNPS-LIBRARY:accession:CCMSLIB00012558659)

@nilshoffmann nilshoffmann self-assigned this Sep 24, 2024
@nilshoffmann nilshoffmann added this to the mzTab-M 2.1.0 milestone Sep 24, 2024
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