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Relax requirements for SML table, relax requirements for SMF charge to allow null #210

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nilshoffmann opened this issue Feb 16, 2024 · 0 comments
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nilshoffmann commented Feb 16, 2024

@sneumann @philouail @jorainer

As mentioned in lifs-tools/rmzTab-m#32 an SML table may not always make sense to report, if no identification has been performed yet. The use case here is that XCMS wants to output mzTab-M feature table information and metadata, but at this point in the workflow, has no identification, adduct, charge or other detailed information available.

Thus, we need to relax the specification at this point. This will lead to validation passing for files that would previously not pass validation with an error. After the change, validation would produce an info level message indicating a possible improvement by including an SML table.

A development build of the jmztab-m validator is online here: https://apps.lifs-tools.org/mztabvalidator-dev/

@nilshoffmann nilshoffmann added this to the mzTab-M 2.0.1 milestone Feb 16, 2024
@nilshoffmann nilshoffmann self-assigned this Feb 16, 2024
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