DESCRIPTION

Package: mbtools
Title: Provides helper functions for microbiome preprocessing and analysis
Version: 0.49.0
Authors@R: c(person("Christian", "Diener", email = "mail@cdiener.com", role = c("aut", "cre")),
             person("Osbaldo", "Resendis-Antonio", email = "resendis@inmegen.gob.mx", role = "ctb"),
             person("Sean", "Gibbons", email = "sgibbons@systemsbiology.org", role = c("ldr", "cph")))
Description: Provides helper functions for microbiome preprocessing and
    analysis.
Depends:
    R (>= 3.6)
Imports:
    Biostrings,
    GenomicAlignments,
    Rsamtools,
    DESeq2,
    apeglm,
    limma,
    ShortRead,
    pbapply,
    phyloseq,
    dada2,
    ggplot2,
    scales,
    stringr,
    Hmisc,
    data.table,
    yaml,
    magrittr,
    futile.logger,
    digest,
    Rcpp,
    xml2,
    zoo,
    corncob
License: Apache License (== 2.0)
URL: https://github.com/Gibbons-Lab/mbtools
BugReports: https://github.com/Gibbons-Lab/mbtools/issues
biocViews: Software, Regression
Encoding: UTF-8
LazyData: true
Suggests:
    testthat,
    covr,
    IHW,
    knitr,
    rmarkdown,
    corncob,
    VGAM,
    vegan
SystemRequirements:
    bowtie2,
    minimap2,
    slimm
RoxygenNote: 7.2.3
VignetteBuilder: knitr
LinkingTo:
    Rcpp
Remotes:
    github::statdivlab/corncob