diff --git a/docs/user/_sources/help.txt b/docs/user/_sources/help.txt index 28aeb4be9..c0feb4500 100644 --- a/docs/user/_sources/help.txt +++ b/docs/user/_sources/help.txt @@ -31,7 +31,7 @@ Common Issues and Solutions #. I'm trying to run the C-PAC GUI on a Mac with Anaconda, but I am being told that I need a "Framework build of python". What is wrong with Anaconda? - Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Specifically, you must set your PYTHONHOME variable to point to your Anaconda environment. To do this, add ``export PYTHONHOME=/home//anaconda`` to your .bash_profile file (in addition to the FSL and AFNI variables), open a fresh terminal, and type `cpac_gui`. + Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Follow the instructions `here `_ to get the GUI up and working. #. I'm re-running a pipeline, but I am receiving many crashes. Most of these crashes tell me that a file that has been moved or no longer exists is being used as an input for a step in the C-PAC pipeline. What is going on and how can I tell C-PAC to use the correct inputs? diff --git a/docs/user/help.html b/docs/user/help.html index c7bb77e8a..ae77bcf3d 100644 --- a/docs/user/help.html +++ b/docs/user/help.html @@ -75,7 +75,7 @@

Common Issues and SolutionsI’m trying to run the C-PAC GUI on a Mac with Anaconda, but I am being told that I need a “Framework build of python”. What is wrong with Anaconda?

-

Good news: nothing is wrong with Anaconda! This error comes up because wx (the framework the C-PAC GUI is based upon) does not play well with Anaconda sometimes, but there is a fix. Specifically, you must set your PYTHONHOME variable to point to your Anaconda environment. To do this, add export PYTHONHOME=/home/<your_username>/anaconda to your .bash_profile file (in addition to the FSL and AFNI variables), open a fresh terminal, and type cpac_gui.

+
  • I’m re-running a pipeline, but I am receiving many crashes. Most of these crashes tell me that a file that has been moved or no longer exists is being used as an input for a step in the C-PAC pipeline. What is going on and how can I tell C-PAC to use the correct inputs?

    @@ -147,4 +147,4 @@

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