All information pertaining to the Galaxy mothur Toolset (GmT) project
This work has been published here (submission in progress)
To run the docker image
docker run -d -p 80:8080 quay.io/shiltemann/galaxy-mothur-toolset
open a browser (firefox/chrome/safari, not IE) and navigate to localhost:8080. Log into Galaxy using the following credentials: [email protected]:admin. The workflow has been imported into this account, and all test data has been uploaded to a shared data library.
To build the docker image from scratch, clone this repository, and run the following command from its root directory:
docker build -f docker/Dockerfile .
There is a training module on how to perform the Mothur MiSeq SOP in Galaxy available from the Galaxy Training Network (GTN) site here