1.1.8

STEMMUS_SCOPE model.

Fixed:

• maximum fractional saturated area in #78

Changed:

• the parameter of evergreen broadleaf forests in #78

1.1.7

STEMMUS_SCOPE model.

Fixed:

• Fix vegetation type and T min in #72

1.1.6

STEMMUS_SCOPE model.

Fixed:

• Fix bugs in DoY and vegetation type processing #67
• Re-generate the exe file in #70

1.1.5

STEMMUS_SCOPE model updating the scripts StartInit.m and Constants.m to use soil era5 land data in #58

Changed:

• src/StartInit.m, src/Constants.m and src/filesread.m in #58

Fixed:

• fix warning message in #57

Added:

• add InitialConditionPath to config files in #58 and #59
• add the notebook download_era5_data.ipynb to utils/notebooks in #54

1.1.4

STEMMUS_SCOPE model updating the scripts StartInit.m and Constants.m to modify initial soil moisture in #49

Changed:

• src/StartInit.m and src/Constants.m in #49
• use warning off in src/STEMMUS_SCOPE_exe.m in #45

Fixed:

• Use warning instead of fprintf #45
• Fix var_t_length so it matches DurationSize in utils/csv_to_nc in #47

Removed:

• unused scripts in #48

1.1.3

STEMMUS_SCOPE model updating the equation calc_rssrbs.m and refactoring the script soilpropertyread.m to use a high-resolution global soil property datasets in #39

Changed:

• src/+equations/calc_rssrbs.m, src/Constants.m, src/Initial_root_biomass.m, src/soilpropertyread.m in #39

Fixed:

• fix the input/output paths in crib config file, see #34
• replacing the keyboard command with a fprintf statement, see #40

1.1.2

STEMMUS_SCOPE model updating ebal script in #24 and #37.

Added

• output of NEE in #37
• documentation in #32 and #33
• variable DurationSize to config file in #36
• documentation of how to convert the model output to netcdf files in utils/csv_to_nc/README.md #27
• python utility for converting the model output to netcdf files in #27

Removed

• utils/csv_to_nc/write.py and utils/csv_to_nc/read.py in #27

Changed

• src/ebal.m in #24 and #37
• src/+io/bin_to_csv.m, src/+io/output_data_binary.m, and
• src/filesread.m in #24 and #36
• update utils/csv_to_nc/Variables_will_be_in_NetCDF_file.csv in #27
• replace mean with nanmean in #37
• readme in #36

Fixed

• the bash script of the running model on Snellius in #25

1.1.1

STEMMUS_SCOPE model including the simplification of freeze/thaw in subroutines introduced in #14.

Added

• Python scripts in Utils to convert the output in csv format to netcdf format, see #11
• The script soilpropertyread.m requires the data of surfdata.nc, see #14.

Removed

• Files src/+io/create_output_files.m , src/+io/output_data.m, src/SCOPE.exe, in #14.
• Files src/PHENOLOGY_STATE.m, src/Root_Fraction_General.m, src/VEGETATION_DYNAMIC.m, src/calc_root_growth.m in #14.

Changed

• src/+equations/Soil_Inertia1.m, src/soilpropertyread.m, src/filesread.m, src/ebal.m, src/StartInit.m , src/STEMMUS_SCOPE.m, src/Initial_root_biomass.m, src/Evap_Cal.m, src/Enrgy_sub.m, src/Constants.m, src/+plot/plots.m, src/+io/select_input.m, src/+io/output_data_binary.m, src/+io/bin_to_csv.m , in #14.

Fixed

• Output path and forcing path in #10

1.1.0

STEMMUS_SCOPE model including changes from pull requests #4 and #9. The changes are summarized below:

Added

• Add subfunction and module for "Root Properties"
• Add modules HT_frez, Initial_root_biomass
• Add module filesread to get input/output paths and prepare input data
• Add module soilpropertyread to prepare soil property input data
• Add module soltir_tp7 to read MODTRAN tp7 file and applies a new MIT algorithm
• Add functions to convert the outputs format from binary to csv
• Add the function output_verfication from SCOPE code
• Add a function to convert timestamp to datetime array from SCOPE code

Changed

• Modify equation of rssrbs
• Modify the equation of "soil respiration"
• Modify modules AirPARM, Air_sub, CnvrgCHK, CondL_Tdisp, CondL_h, CondT_coeff, CondV_DE, CondV_DVg, Cond_k_g, Constants, Density_V, Dtrmn_Z, EfeCapCond, EnrgyPARM, Enrgy_BC, Enrgy_Solve, Enrgy_sub, Evap_Cal, Forcing_PARM, Max_Rootdepth, ObservationPoints, SOIL2, StartInit, TimestepCHK, biochemical, calc_rsoil, calc_sfactor, ebal, hPARM, h_BC, h_sub, hh_Solve
• Modify STEMMUS_SCOPE
• Refactor function PlotResults1
• Remove some of the print statements related to outputs in module IO
• Refactor function plot in module plot to read csv format instead dat format
• Update readme

1.0.0

Snapshots of codes used for the paper Integrated modeling of canopy photosynthesis, fluorescence, and the transfer of energy, mass, and momentum in the soil–plant–atmosphere continuum (STEMMUS–SCOPE v1.0.0).