Ontology name not visualised in sample_type

[floradanna]

In sample_type, the ontology name is the same of the attribute name, but it should be the name of the ontology instead, as specified in template.

[floradanna]

Would it be better to shown the ontology name or description? Name is shorter, Description is more descriptive.

[vdkkia]

@floradanna ENVO in your example is the name of the source. Do you want it to be shown?

[floradanna]

We need to agree with Rafael on what to show first:

• ENVO
• Environmental Ontology
• the rootTerm name
• the rootTermURI
• the link to the entire ontology
• ...?

Let's skip this issue for now and keep it open. It is not urgent.

[floradanna]

sample_controlled_vocabs title should be = the name or description of the ontology.
Example: Attribute name = organism part; sample_controlled_vocabs title = efo or Experimental Factor Ontology.

Ideally, the sample_controlled_vocabs title would be the term associated with the rootTermURI, but not sure if this info get stored somewhere in the instance database.

[floradanna]

Found new issue for Ontology term "organism". Not all ontology terms are available in the dynamic table. Maybe time out issue?

Possible solution: when installing the instance, all terms need to be loaded and stored (it might takes several hours but only at the beginning).

[floradanna]

@vdkkia The sample_controlled_vocabs title would be the term associated with the rootTermURI, which it should be stored somewhere in the instance. Could you please do this?