From 34bec6a2fac9c01d154acfa36c37c22b5d8d7750 Mon Sep 17 00:00:00 2001
From: vasudeva8 <vasudeva.sarma@sanger.ac.uk>
Date: Tue, 27 Aug 2024 16:25:35 +0100
Subject: [PATCH] test files for v4.4 changes

---
 .../failed/failed_body_invalid_CNVTR_1.vcf    | 25 ++++++++++++
 .../failed/failed_body_invalid_CNVTR_2.vcf    | 39 +++++++++++++++++++
 .../failed/failed_body_invalid_CNVTR_3.vcf    | 23 +++++++++++
 .../failed/failed_body_invalid_CNVTR_4.vcf    | 24 ++++++++++++
 .../v4.4/failed/failed_body_invalid_SV_1.vcf  | 13 +++++++
 .../v4.4/failed/failed_body_invalid_SV_2.vcf  | 13 +++++++
 .../v4.4/failed/failed_body_invalid_SV_3.vcf  | 17 ++++++++
 .../v4.4/failed/failed_body_invalid_SV_4.vcf  | 21 ++++++++++
 .../v4.4/failed/failed_body_invalid_SV_5.vcf  | 22 +++++++++++
 .../v4.4/failed/failed_body_invalid_SV_6.vcf  | 10 +++++
 .../failed/failed_body_invalid_format_1.vcf   | 21 ++++++++++
 .../failed/failed_body_invalid_format_2.vcf   | 17 ++++++++
 .../failed/failed_body_invalid_info_CICN.vcf  | 17 ++++++++
 .../failed_body_invalid_info_SVCLAIM.vcf      | 22 +++++++++++
 .../failed/failed_body_invalid_info_SVLEN.vcf | 24 ++++++++++++
 .../failed/failed_body_invalid_info_count.vcf | 21 ++++++++++
 .../failed/failed_body_invalid_sample_PSL.vcf | 19 +++++++++
 .../failed/failed_body_invalid_sample_PSO.vcf | 20 ++++++++++
 .../failed/failed_body_invalid_sample_PSQ.vcf | 21 ++++++++++
 ...failed_body_invalid_sample_format_CICN.vcf | 20 ++++++++++
 .../failed_meta_invalid_info_number_P_1.vcf   | 17 ++++++++
 .../v4.4/passed/passed_body_SV_CNVTR.vcf      | 19 +++++++++
 .../v4.4/passed/passed_body_info_CICN.vcf     | 16 ++++++++
 .../v4.4/passed/passed_body_info_SVCLAIM.vcf  | 15 +++++++
 .../v4.4/passed/passed_body_info_SVLEN.vcf    | 23 +++++++++++
 .../passed/passed_body_sample_format_CICN.vcf | 18 +++++++++
 .../v4.4/passed/passed_body_samples_1.vcf     | 20 ++++++++++
 .../passed/passed_meta_field_optional.vcf     | 12 ++++++
 .../v4.4/passed/passed_meta_format_P_1.vcf    | 16 ++++++++
 29 files changed, 565 insertions(+)
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_CNVTR_1.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_CNVTR_2.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_CNVTR_3.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_CNVTR_4.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_SV_1.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_SV_2.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_SV_3.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_SV_4.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_SV_5.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_SV_6.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_format_1.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_format_2.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_info_CICN.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_info_SVCLAIM.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_info_SVLEN.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_info_count.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_sample_PSL.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_sample_PSO.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_sample_PSQ.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_body_invalid_sample_format_CICN.vcf
 create mode 100644 test/input_files/v4.4/failed/failed_meta_invalid_info_number_P_1.vcf
 create mode 100644 test/input_files/v4.4/passed/passed_body_SV_CNVTR.vcf
 create mode 100644 test/input_files/v4.4/passed/passed_body_info_CICN.vcf
 create mode 100644 test/input_files/v4.4/passed/passed_body_info_SVCLAIM.vcf
 create mode 100644 test/input_files/v4.4/passed/passed_body_info_SVLEN.vcf
 create mode 100644 test/input_files/v4.4/passed/passed_body_sample_format_CICN.vcf
 create mode 100644 test/input_files/v4.4/passed/passed_body_samples_1.vcf
 create mode 100644 test/input_files/v4.4/passed/passed_meta_field_optional.vcf
 create mode 100644 test/input_files/v4.4/passed/passed_meta_format_P_1.vcf

diff --git a/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_1.vcf b/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_1.vcf
new file mode 100644
index 00000000..e9438b9f
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_1.vcf
@@ -0,0 +1,25 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid info field on CNV:TR RN-RUS-RUL
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##INFO=<ID=RN,Number=A,Type=Integer,Description="Total number of repeat sequences in this allele">
+##INFO=<ID=RUS,Number=.,Type=String,Description="Repeat unit sequence of the corresponding repeat sequence">
+##INFO=<ID=RUC,Number=.,Type=Float,Description="Repeat unit count of corresponding repeat sequence">
+##INFO=<ID=RB,Number=.,Type=Integer,Description="Total number of bases in the corresponding repeat sequence">
+##INFO=<ID=RUB,Number=.,Type=Integer,Description="Number of bases in each individual repeat unit">
+##INFO=<ID=RUL,Number=.,Type=Integer,Description="Repeat unit length of the corresponding repeat sequence">
+##ALT=<ID=CNV:TR,Description="Tandem repeat determined based on DNA abundance">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	70	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10	GT	0|0
+1	80	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RN=2;RUL=3	GT	0|0
+1	90	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=TG,TA	GT	0|0
+1	90	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RN=2;RUL=2	GT	0|0
+1	100	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RN=1;RUS=T,A	GT	0|0
+1	110	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RN=1;RUL=2;RUS=T,A	GT	0|0
+1	120	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RN=1;RUL=2;RUS=.	GT	0|0
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_2.vcf b/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_2.vcf
new file mode 100644
index 00000000..b013b3b6
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_2.vcf
@@ -0,0 +1,39 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid info field on CNV:TR RN - RUC, RB, CIRUC, CIRB
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##INFO=<ID=RN,Number=A,Type=Integer,Description="Total number of repeat sequences in this allele">
+##INFO=<ID=RUS,Number=.,Type=String,Description="Repeat unit sequence of the corresponding repeat sequence">
+##INFO=<ID=RUC,Number=.,Type=Float,Description="Repeat unit count of corresponding repeat sequence">
+##INFO=<ID=RB,Number=.,Type=Integer,Description="Total number of bases in the corresponding repeat sequence">
+##INFO=<ID=RUB,Number=.,Type=Integer,Description="Number of bases in each individual repeat unit">
+##INFO=<ID=RUL,Number=.,Type=Integer,Description="Repeat unit length of the corresponding repeat sequence">
+##INFO=<ID=CIRUC,Number=.,Type=Float,Description="Confidence interval around RUC">
+##INFO=<ID=CIRB,Number=.,Type=Integer,Description="Confidence interval around RB">
+##ALT=<ID=CNV:TR,Description="Tandem repeat determined based on DNA abundance">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	70	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=TT;RUC=2,2	GT	0|0
+1	80	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RN=2;RUL=2,10;RUC=3	GT	0|0
+1	90	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RN=2;RUL=2,10;RB=3	GT	0|0
+1	100	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RB=30;CIRB=1	GT	0|0
+1	110	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RB=30;CIRB=1,.	GT	0|0
+1	120	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RB=30;CIRB=.,-1	GT	0|0
+1	130	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RB=30;CIRB=1,-1	GT	0|0
+1	140	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RB=30;CIRB=-1,-1	GT	0|0
+1	150	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RB=30;CIRB=-8,8,9	GT	0|0
+1	160	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT,TT;RB=.,20;CIRB=-8,8,-9,0	GT	0|0
+1	170	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT,TT;CIRB=-8,8	GT	0|0
+1	200	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RUC=3.2;CIRUC=1	GT	0|0
+1	210	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RUC=3.2;CIRUC=1,.	GT	0|0
+1	220	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RUC=3.2;CIRUC=.,-1	GT	0|0
+1	230	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RUC=3.2;CIRUC=1,-1	GT	0|0
+1	240	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RUC=3.2;CIRUC=-1,-1	GT	0|0
+1	250	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT;RUC=3;CIRUC=-8,8,9	GT	0|0
+1	260	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT,TT;RUC=.,2;CIRUC=-8,8,-9,0	GT	0|0
+1	270	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=AT,TT;CIRUC=-8,8,-9,0	GT	0|0
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_3.vcf b/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_3.vcf
new file mode 100644
index 00000000..f71cf86d
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_3.vcf
@@ -0,0 +1,23 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid info field on CNV:TR RN - RUC, RB; warning: RB ~= RUC * RUL; error to make this fail: RUC not integer with RUB
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##INFO=<ID=RN,Number=A,Type=Integer,Description="Total number of repeat sequences in this allele">
+##INFO=<ID=RUS,Number=.,Type=String,Description="Repeat unit sequence of the corresponding repeat sequence">
+##INFO=<ID=RUC,Number=.,Type=Float,Description="Repeat unit count of corresponding repeat sequence">
+##INFO=<ID=RB,Number=.,Type=Integer,Description="Total number of bases in the corresponding repeat sequence">
+##INFO=<ID=RUB,Number=.,Type=Integer,Description="Number of bases in each individual repeat unit">
+##INFO=<ID=RUL,Number=.,Type=Integer,Description="Repeat unit length of the corresponding repeat sequence">
+##INFO=<ID=CIRUC,Number=.,Type=Float,Description="Confidence interval around RUC">
+##INFO=<ID=CIRB,Number=.,Type=Integer,Description="Confidence interval around RB">
+##ALT=<ID=CNV:TR,Description="Tandem repeat determined based on DNA abundance">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	70	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=TT;RUC=2.3;RB=5	GT	0|0
+1	80	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUL=2;RUC=2.3;RB=5	GT	0|0
+1	90	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUL=2;RUC=2.3;RB=5;RUB=10	GT	0|0
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_4.vcf b/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_4.vcf
new file mode 100644
index 00000000..f10b733f
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_CNVTR_4.vcf
@@ -0,0 +1,24 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid info field on CNV:TR RN - RUB, RUC
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##INFO=<ID=RN,Number=A,Type=Integer,Description="Total number of repeat sequences in this allele">
+##INFO=<ID=RUS,Number=.,Type=String,Description="Repeat unit sequence of the corresponding repeat sequence">
+##INFO=<ID=RUC,Number=.,Type=Float,Description="Repeat unit count of corresponding repeat sequence">
+##INFO=<ID=RB,Number=.,Type=Integer,Description="Total number of bases in the corresponding repeat sequence">
+##INFO=<ID=RUB,Number=.,Type=Integer,Description="Number of bases in each individual repeat unit">
+##INFO=<ID=RUL,Number=.,Type=Integer,Description="Repeat unit length of the corresponding repeat sequence">
+##INFO=<ID=CIRUC,Number=.,Type=Float,Description="Confidence interval around RUC">
+##INFO=<ID=CIRB,Number=.,Type=Integer,Description="Confidence interval around RB">
+##ALT=<ID=CNV:TR,Description="Tandem repeat determined based on DNA abundance">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	70	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=TT;RUC=2.3;RUB=2	GT	0|0
+1	80	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RN=2;RUS=TT,AA;RUC=.,2;RUB=2,2	GT	0|0
+1	90	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=TT;RUC=2;RUB=2	GT	0|0
+1	100	rs180734498	C	<CNV:TR>	100	PASS	SVLEN=10;RUS=TT;RUB=2	GT	0|0
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_SV_1.vcf b/test/input_files/v4.4/failed/failed_body_invalid_SV_1.vcf
new file mode 100644
index 00000000..8253ae10
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_SV_1.vcf
@@ -0,0 +1,13 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid SV
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##ALT=<ID=DEL,Description="Deletion">
+##ALT=<ID=INS>
+##FILTER=<ID=F1,Description="Filter1">
+##FILTER=<ID=F2>
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DAL:TRE>	100	PASS	SVLEN=1;SVCLAIM=D	GT	0|0
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_SV_2.vcf b/test/input_files/v4.4/failed/failed_body_invalid_SV_2.vcf
new file mode 100644
index 00000000..b8a8dbcf
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_SV_2.vcf
@@ -0,0 +1,13 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid SV - SVLEN not present
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##ALT=<ID=DEL,Description="Deletion">
+##ALT=<ID=INS>
+##FILTER=<ID=F1,Description="Filter1">
+##FILTER=<ID=F2>
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>	100	PASS	SVCLAIM=D	GT	0|0
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_SV_3.vcf b/test/input_files/v4.4/failed/failed_body_invalid_SV_3.vcf
new file mode 100644
index 00000000..97305cda
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_SV_3.vcf
@@ -0,0 +1,17 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid SV - SVCLAIM not present for DEL/DUP
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##ALT=<ID=DEL,Description="Deletion">
+##ALT=<ID=DUP,Description="Duplication">
+##ALT=<ID=INV,Description="Inversion">
+##ALT=<ID=INS>
+##FILTER=<ID=F1,Description="Filter1">
+##FILTER=<ID=F2>
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<INV>	100	PASS	SVLEN=10	GT	0|0
+1	700	rs180734498	C	<DEL>	100	PASS	SVLEN=10	GT	0|0
+1	700	rs180734498	C	<DUP>	100	PASS	SVLEN=10	GT	0|0
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_SV_4.vcf b/test/input_files/v4.4/failed/failed_body_invalid_SV_4.vcf
new file mode 100644
index 00000000..cc031384
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_SV_4.vcf
@@ -0,0 +1,21 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid SV - CNV:TR must have RUS/RUL
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##INFO=<ID=RN,Number=A,Type=Integer,Description="Total number of repeat sequences in this allele">
+##INFO=<ID=RUS,Number=.,Type=String,Description="Repeat unit sequence of the corresponding repeat sequence">
+##INFO=<ID=RUC,Number=.,Type=Float,Description="Repeat unit count of corresponding repeat sequence">
+##INFO=<ID=RB,Number=.,Type=Integer,Description="Total number of bases in the corresponding repeat sequence">
+##INFO=<ID=RUB,Number=.,Type=Integer,Description="Number of bases in each individual repeat unit">
+##INFO=<ID=RUL,Number=.,Type=Integer,Description="Repeat unit length of the corresponding repeat sequence">
+##ALT=<ID=CNV:TR,Description="Tandem repeat determined based on DNA abundance">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUS=TTT	GT	0|0
+1	800	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUL=3	GT	0|0
+1	900	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D	GT	0|0
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_SV_5.vcf b/test/input_files/v4.4/failed/failed_body_invalid_SV_5.vcf
new file mode 100644
index 00000000..3393c276
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_SV_5.vcf
@@ -0,0 +1,22 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid SV - CNV:TR - RB ~= RUL * RUC
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##INFO=<ID=RN,Number=A,Type=Integer,Description="Total number of repeat sequences in this allele">
+##INFO=<ID=RUS,Number=.,Type=String,Description="Repeat unit sequence of the corresponding repeat sequence">
+##INFO=<ID=RUC,Number=.,Type=Float,Description="Repeat unit count of corresponding repeat sequence">
+##INFO=<ID=RB,Number=.,Type=Integer,Description="Total number of bases in the corresponding repeat sequence">
+##INFO=<ID=RUB,Number=.,Type=Integer,Description="Number of bases in each individual repeat unit">
+##INFO=<ID=RUL,Number=.,Type=Integer,Description="Repeat unit length of the corresponding repeat sequence">
+##ALT=<ID=CNV:TR,Description="Tandem repeat determined based on DNA abundance">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUS=TTT;RUC=30;RB=100	GT	0|0
+1	800	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUL=3;RUC=30;RB=100	GT	0|0
+1	900	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUS=TTT;RUL=2	GT	0|0
+1	1000	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUS=TTT;RUL=3	GT	0|0
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_SV_6.vcf b/test/input_files/v4.4/failed/failed_body_invalid_SV_6.vcf
new file mode 100644
index 00000000..2616fa01
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_SV_6.vcf
@@ -0,0 +1,10 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid SV - BND
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##ALT=<ID=BND:Test,Description="Breakend SV acceptable in v4.3">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<BND:Test>	100	PASS	CN=100;SVLEN=1	GT	0|0
+
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_format_1.vcf b/test/input_files/v4.4/failed/failed_body_invalid_format_1.vcf
new file mode 100644
index 00000000..39652f55
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_format_1.vcf
@@ -0,0 +1,21 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid format fields, with CICN, format CN must be present
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##INFO=<ID=RN,Number=A,Type=Integer,Description="Total number of repeat sequences in this allele">
+##INFO=<ID=RUS,Number=.,Type=String,Description="Repeat unit sequence of the corresponding repeat sequence">
+##INFO=<ID=RUC,Number=.,Type=Float,Description="Repeat unit count of corresponding repeat sequence">
+##INFO=<ID=RB,Number=.,Type=Integer,Description="Total number of bases in the corresponding repeat sequence">
+##INFO=<ID=RUB,Number=.,Type=Integer,Description="Number of bases in each individual repeat unit">
+##INFO=<ID=RUL,Number=.,Type=Integer,Description="Repeat unit length of the corresponding repeat sequence">
+##ALT=<ID=CNV:TR,Description="Tandem repeat determined based on DNA abundance">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUS=TTT	GT:CN	0|0:2
+1	800	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUL=3	GT:CN:CICN	0|0:2:-1,1
+1	900	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUL=3	GT:CICN	0|0:-1,2
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_format_2.vcf b/test/input_files/v4.4/failed/failed_body_invalid_format_2.vcf
new file mode 100644
index 00000000..9cb35d38
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_format_2.vcf
@@ -0,0 +1,17 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid format fields, SVLEN must be same for DEL/DUP/CNV when format CN is present
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D,.,D	GT:CN	0|0:2
+1	800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=D,.,DJ	GT:CN:CICN	0|0:2:-1,1
+1	900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,J	GT:CN:CICN	0|0:2:-1,2
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_info_CICN.vcf b/test/input_files/v4.4/failed/failed_body_invalid_info_CICN.vcf
new file mode 100644
index 00000000..a8c67046
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_info_CICN.vcf
@@ -0,0 +1,17 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid info CICN value
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##INFO=<ID=CICN,Number=.,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	800	rs180734498	C	<CNV>	100	PASS	SVLEN=2;SVCLAIM=D;CN=1.2;CICN=-1	GT	0/0
+1	900	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D;CN=1.2;CICN=-2,-1	GT	0/0
+1	1000	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D;CN=1.2;CICN=1,1.1	GT	0/0
+1	1100	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D;CN=1.2;CICN=-1.5,1.4	GT	0/0
+1	1200	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D;CN=1.2;CICN=1,5	GT	0/0
+1	1300	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D	GT:CN:CICN	0/0:1.2:1,1,1
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_info_SVCLAIM.vcf b/test/input_files/v4.4/failed/failed_body_invalid_info_SVCLAIM.vcf
new file mode 100644
index 00000000..efc0a61c
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_info_SVCLAIM.vcf
@@ -0,0 +1,22 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid info SVCLAIM values
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+##ALT=<ID=INS,Description="INS">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D	GT	0|0
+1	800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=J,.,J	GT	0/0
+1	900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,.	GT	0/0|1
+1	1000	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=.,.,.	GT	0/0|1
+1	1100	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,D,D	GT	0/0|1
+1	1200	rs180734498	C	T[1:1200[	100	PASS	SVLEN=10;SVCLAIM=D	GT	0/0|1
+1	1300	rs180734498	C	<INV>	100	PASS	SVLEN=10;SVCLAIM=D	GT	0/0|1
+1	1400	rs180734498	C	<INS>	100	PASS	SVLEN=10;SVCLAIM=D	GT	0/0|1
+1	1500	rs180734498	C	T	100	PASS	SVLEN=10;SVCLAIM=D	GT	0/0|1
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_info_SVLEN.vcf b/test/input_files/v4.4/failed/failed_body_invalid_info_SVLEN.vcf
new file mode 100644
index 00000000..35564d37
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_info_SVLEN.vcf
@@ -0,0 +1,24 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid info SVLEN values
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+##ALT=<ID=INS,Description="INS">
+##ALT=<ID=INV,Description="INV">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,1,2;SVCLAIM=D,.,D	GT	0|0
+1	800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,1,1;SVCLAIM=D,.,J	GT	0/0
+1	900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,1,21;SVCLAIM=D,.,D	GT	0/0|1
+1	1000	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,1,21;SVCLAIM=D,.,D	GT	0/0|1
+1	1100	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,1,21;SVCLAIM=D,.,D	GT	0/0|1
+1	1200	rs180734498	C	T[1:1200[	100	PASS	SVLEN=10;SVCLAIM=.	GT	0/0|1
+1	1300	rs180734498	C	<INV>	100	PASS	SVLEN=10;SVCLAIM=.	GT	0/0|1
+1	1400	rs180734498	C	<INS>	100	PASS	SVLEN=10;SVCLAIM=.	GT	0/0|1
+1	1500	rs180734498	C	<INS>	100	PASS	SVLEN=10,2;SVCLAIM=.	GT	0/0|1
+1	1600	rs180734498	C	T	100	PASS	SVLEN=2;SVCLAIM=.	GT	0/0|1
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_info_count.vcf b/test/input_files/v4.4/failed/failed_body_invalid_info_count.vcf
new file mode 100644
index 00000000..2dc1ba09
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_info_count.vcf
@@ -0,0 +1,21 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid info field count 
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=MEINFO,Number=.,Type=String,Description="Mobile element info of the form NAME,START,END,POLARITY">
+##INFO=<ID=METRANS,Number=.,Type=String,Description="Mobile element transduction info of the form CHR,START,END,POLARITY">
+##INFO=<ID=CICN,Number=.,Type=Float,Description="Confidence interval around copy number">
+##INFO=<ID=CIPOS,Number=.,Type=Integer,Description="Confidence interval around POS for symbolic structural variants">
+##INFO=<ID=CIEND,Number=.,Type=Integer,Description="Confidence interval around END for symbolic structural variants">
+##INFO=<ID=CILEN,Number=.,Type=Integer,Description="Confidence interval for the SVLEN field">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	70	rs180734498	C	T	100	PASS	MEINFO=1	GT	0|0
+1	80	rs180734498	C	T	100	PASS	MEINFO=1,2,3,A	GT	0|0
+1	90	rs180734498	C	T	100	PASS	METRANS=1	GT	0|0
+1	100	rs180734498	C	T	100	PASS	METRANS=1,2,3,A	GT	0|0
+1	110	rs180734498	C	T	100	PASS	CICN=-1.2	GT	0|0
+1	120	rs180734498	C	T	100	PASS	CIPOS=-1	GT	0|0
+1	130	rs180734498	C	T	100	PASS	CIEND=-1	GT	0|0
+1	140	rs180734498	C	T	100	PASS	CILEN=-1	GT	0|0
+
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_sample_PSL.vcf b/test/input_files/v4.4/failed/failed_body_invalid_sample_PSL.vcf
new file mode 100644
index 00000000..c5584570
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_sample_PSL.vcf
@@ -0,0 +1,19 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid sample value, unphased allele must have PSL as '.'
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+##FORMAT=<ID=PSL,Number=P,Type=String,Description="PSL">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D,.,D	GT:PSL	0|0:T1,T2
+1	800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=D,.,DJ	GT:PSL	0/0:.,.
+1	900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,J	GT:PSL	0/0|1:T1,.,T2
+1	1700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D,.,D	GT:PSL	0|0:.,.
+1	1800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=D,.,DJ	GT:PSL	0/0:T1,T2
+1	1900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,J	GT:PSL	0/0|1:T1,T2,T3
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_sample_PSO.vcf b/test/input_files/v4.4/failed/failed_body_invalid_sample_PSO.vcf
new file mode 100644
index 00000000..7e5024c3
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_sample_PSO.vcf
@@ -0,0 +1,20 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid sample value, PSO to be '.' with PSL '.'
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+##FORMAT=<ID=PSL,Number=P,Type=String,Description="PSL">
+##FORMAT=<ID=PSO,Number=P,Type=Integer,Description="PSO">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D,.,D	GT:PSL:PSO	0|0:T1,T2:1,9
+1	800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=D,.,DJ	GT:PSL:PSO	0/0:.,.:.,.
+1	900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,J	GT:PSL:PSO	0/0|1:T1,.,T2:.,.,.
+1	1700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D,.,D	GT:PSL:PSO	0|0:.,.:1,.
+1	1800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=D,.,DJ	GT:PSL:PSO	0/0:.,.:1,2
+1	1900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,J	GT:PSL:PSO	0/0|1:T1,.,T3:.,2,.
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_sample_PSQ.vcf b/test/input_files/v4.4/failed/failed_body_invalid_sample_PSQ.vcf
new file mode 100644
index 00000000..5a973b5d
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_sample_PSQ.vcf
@@ -0,0 +1,21 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid sample value, PSQ to be '.' with PSL '.'
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+##FORMAT=<ID=PSL,Number=P,Type=String,Description="PSL">
+##FORMAT=<ID=PSO,Number=P,Type=Integer,Description="PSO">
+##FORMAT=<ID=PSQ,Number=P,Type=Integer,Description="PSQ">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D,.,D	GT:PSL:PSQ	0|0:T1,T2:1,9
+1	800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=D,.,DJ	GT:PSL:PSQ	0/0:.,.:.,.
+1	900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,J	GT:PSL:PSQ	0/0|1:T1,.,T2:.,.,.
+1	1700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D,.,D	GT:PSL:PSQ	0|0:.,.:1,.
+1	1800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=D,.,DJ	GT:PSL:PSQ	0/0:.,.:1,2
+1	1900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,J	GT:PSL:PSQ	0/0|1:T1,.,T3:.,2,.
diff --git a/test/input_files/v4.4/failed/failed_body_invalid_sample_format_CICN.vcf b/test/input_files/v4.4/failed/failed_body_invalid_sample_format_CICN.vcf
new file mode 100644
index 00000000..770149c0
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_body_invalid_sample_format_CICN.vcf
@@ -0,0 +1,20 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid sample value, format CICN invalid
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="CI Copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	800	rs180734498	C	<CNV>	100	PASS	SVLEN=2;SVCLAIM=D	GT:CN:CICN	0/0:1.2:-1
+1	900	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D	GT:CN:CICN	0/0|:1.2:-1,1
+1	1000	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D	GT:CN:CICN	0/0:1.2:-1,-1
+1	1100	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D	GT:CN:CICN	0/0:1.2:1,-1
+1	1200	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D	GT:CN:CICN	0/0:1.2:1,1
+1	1300	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D	GT:CN:CICN	0/0:1.2:1,1,1
diff --git a/test/input_files/v4.4/failed/failed_meta_invalid_info_number_P_1.vcf b/test/input_files/v4.4/failed/failed_meta_invalid_info_number_P_1.vcf
new file mode 100644
index 00000000..b8172ed6
--- /dev/null
+++ b/test/input_files/v4.4/failed/failed_meta_invalid_info_number_P_1.vcf
@@ -0,0 +1,17 @@
+##fileformat=VCFv4.4
+##CauseOfFailure=invalid info field number P
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##INFO=<ID=RN,Number=A,Type=Integer,Description="Total number of repeat sequences in this allele">
+##INFO=<ID=RUS,Number=.,Type=String,Description="Repeat unit sequence of the corresponding repeat sequence">
+##INFO=<ID=RUC,Number=.,Type=Float,Description="Repeat unit count of corresponding repeat sequence">
+##INFO=<ID=RB,Number=.,Type=Integer,Description="Total number of bases in the corresponding repeat sequence">
+##INFO=<ID=RUB,Number=.,Type=Integer,Description="Number of bases in each individual repeat unit">
+##INFO=<ID=TST,Number=P,Type=Integer,Description="Test">
+##ALT=<ID=CNV:TR,Description="Tandem repeat determined based on DNA abundance">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<CNV:TR>	100	PASS	TST=test;CN=100;SVLEN=1;SVCLAIM=D;RUS=TTT	GT	0|0
diff --git a/test/input_files/v4.4/passed/passed_body_SV_CNVTR.vcf b/test/input_files/v4.4/passed/passed_body_SV_CNVTR.vcf
new file mode 100644
index 00000000..6fa44d46
--- /dev/null
+++ b/test/input_files/v4.4/passed/passed_body_SV_CNVTR.vcf
@@ -0,0 +1,19 @@
+##fileformat=VCFv4.4
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##INFO=<ID=RN,Number=A,Type=Integer,Description="Total number of repeat sequences in this allele">
+##INFO=<ID=RUS,Number=.,Type=String,Description="Repeat unit sequence of the corresponding repeat sequence">
+##INFO=<ID=RUC,Number=.,Type=Float,Description="Repeat unit count of corresponding repeat sequence">
+##INFO=<ID=RB,Number=.,Type=Integer,Description="Total number of bases in the corresponding repeat sequence">
+##INFO=<ID=RUB,Number=.,Type=Integer,Description="Number of bases in each individual repeat unit">
+##INFO=<ID=RUL,Number=.,Type=Integer,Description="Repeat unit length of the corresponding repeat sequence">
+##ALT=<ID=CNV:TR,Description="Tandem repeat determined based on DNA abundance">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUS=TTT;RUC=33;RB=100	GT	0|0
+1	800	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUL=3;RUC=33;RB=100	GT	0|0
diff --git a/test/input_files/v4.4/passed/passed_body_info_CICN.vcf b/test/input_files/v4.4/passed/passed_body_info_CICN.vcf
new file mode 100644
index 00000000..d0907808
--- /dev/null
+++ b/test/input_files/v4.4/passed/passed_body_info_CICN.vcf
@@ -0,0 +1,16 @@
+##fileformat=VCFv4.4
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##INFO=<ID=CICN,Number=.,Type=Float,Description="Confidence interval around copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	800	rs180734498	C	<CNV>	100	PASS	SVLEN=2;SVCLAIM=D;CN=1.2;CICN=-1.8,2.3	GT	0/0
+1	900	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D;CN=1.2;CICN=.,1	GT	0/0
+1	1000	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D;CN=1.2;CICN=-1,.	GT	0/0
+1	1100	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D;CN=1.2;CICN=.,.	GT	0/0
+1	1200	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D;CN=1.2	GT	0/0
+
diff --git a/test/input_files/v4.4/passed/passed_body_info_SVCLAIM.vcf b/test/input_files/v4.4/passed/passed_body_info_SVCLAIM.vcf
new file mode 100644
index 00000000..864c7434
--- /dev/null
+++ b/test/input_files/v4.4/passed/passed_body_info_SVCLAIM.vcf
@@ -0,0 +1,15 @@
+##fileformat=VCFv4.4
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D,.,J	GT	0|0
+1	800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=D,.,J	GT	0/0
+1	900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,J	GT	0/0|1
+1	1000	rs180734498	C	T[1:1000[	100	PASS	SVLEN=10;SVCLAIM=J	GT	0/0|1
diff --git a/test/input_files/v4.4/passed/passed_body_info_SVLEN.vcf b/test/input_files/v4.4/passed/passed_body_info_SVLEN.vcf
new file mode 100644
index 00000000..2ac69e0b
--- /dev/null
+++ b/test/input_files/v4.4/passed/passed_body_info_SVLEN.vcf
@@ -0,0 +1,23 @@
+##fileformat=VCFv4.4
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+##ALT=<ID=INS,Description="INS">
+##ALT=<ID=INV,Description="INV">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,1;SVCLAIM=D,.,D	GT	0|0
+1	800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,2;SVCLAIM=D,.,J	GT	0/0
+1	900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=21,.,21;SVCLAIM=D,.,D	GT	0/0|1
+1	1000	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=21,.,21;SVCLAIM=D,.,D	GT	0/0|1
+1	1100	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=21,.,21;SVCLAIM=D,.,D	GT	0/0|1
+1	1200	rs180734498	C	T[1:1200[	100	PASS	SVLEN=.;SVCLAIM=.	GT	0/0|1
+1	1300	rs180734498	C	<INV>	100	PASS	SVLEN=.;SVCLAIM=.	GT	0/0|1
+1	1400	rs180734498	C	<INS>	100	PASS	SVLEN=10;SVCLAIM=.	GT	0/0|1
+1	1500	rs180734498	C	<INS>	100	PASS	SVLEN=10;SVCLAIM=.	GT	0/0|1
+1	1600	rs180734498	C	T	100	PASS	SVLEN=.;SVCLAIM=.	GT	0/0|1
diff --git a/test/input_files/v4.4/passed/passed_body_sample_format_CICN.vcf b/test/input_files/v4.4/passed/passed_body_sample_format_CICN.vcf
new file mode 100644
index 00000000..410b00a9
--- /dev/null
+++ b/test/input_files/v4.4/passed/passed_body_sample_format_CICN.vcf
@@ -0,0 +1,18 @@
+##fileformat=VCFv4.4
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+##FORMAT=<ID=CN,Number=1,Type=Float,Description="Copy number">
+##FORMAT=<ID=CICN,Number=2,Type=Float,Description="CI Copy number">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	800	rs180734498	C	<CNV>	100	PASS	SVLEN=2;SVCLAIM=D	GT:CN:CICN	0/0:1.2:-1,.
+1	900	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D	GT:CN:CICN	0/0|:1.2:-1,1
+1	1000	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D	GT:CN:CICN	0/0:1.2:-1,1
+1	1100	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D	GT:CN:CICN	0/0:1.2:-1,0
+1	1200	rs180734498	C	<CNV>	100	PASS	SVLEN=1;SVCLAIM=D	GT:CN:CICN	0/0:1.2:-0.1,1
diff --git a/test/input_files/v4.4/passed/passed_body_samples_1.vcf b/test/input_files/v4.4/passed/passed_body_samples_1.vcf
new file mode 100644
index 00000000..05e5cf21
--- /dev/null
+++ b/test/input_files/v4.4/passed/passed_body_samples_1.vcf
@@ -0,0 +1,20 @@
+##fileformat=VCFv4.4
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##ALT=<ID=CNV,Description="CNV">
+##ALT=<ID=DEL,Description="DEL">
+##ALT=<ID=DUP,Description="DUP">
+##FORMAT=<ID=PSL,Number=P,Type=String,Description="PSL">
+##FORMAT=<ID=PSO,Number=P,Type=Integer,Description="PSO">
+##FORMAT=<ID=PSQ,Number=P,Type=Integer,Description="PSQ">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D,.,D	GT:PSL	0|0:T1,T2
+1	800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=D,.,DJ	GT:PSL	0/0:.,.
+1	900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,J	GT:PSL:PSO	/0|0|1:.,T2,T3:.,1,2
+1	1700	rs180734498	C	<DEL>,T,<DUP>	100	PASS	SVLEN=1,.,2;SVCLAIM=D,.,D	GT:PSL:PSO	0/0:.,.:.,.
+1	1800	rs180734498	C	<CNV>,T,<DEL>	100	PASS	SVLEN=2,.,1;SVCLAIM=D,.,DJ	GT:PSL:PSQ	0|0:T1,T2:1,2
+1	1900	rs180734498	C	<CNV>,T,<DUP>	100	PASS	SVLEN=1,.,21;SVCLAIM=D,.,J	GT:PSL:PSQ	0/0|1:T1,.,T3:1,.,3
diff --git a/test/input_files/v4.4/passed/passed_meta_field_optional.vcf b/test/input_files/v4.4/passed/passed_meta_field_optional.vcf
new file mode 100644
index 00000000..d2fe9483
--- /dev/null
+++ b/test/input_files/v4.4/passed/passed_meta_field_optional.vcf
@@ -0,0 +1,12 @@
+##fileformat=VCFv4.4
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##ALT=<ID=DEL,Description="Deletion">
+##ALT=<ID=INS>
+##FILTER=<ID=F1,Description="Filter1">
+##FILTER=<ID=F2>
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<DEL>	100	PASS	SVLEN=1;SVCLAIM=D	GT	0|0
diff --git a/test/input_files/v4.4/passed/passed_meta_format_P_1.vcf b/test/input_files/v4.4/passed/passed_meta_format_P_1.vcf
new file mode 100644
index 00000000..efd0044c
--- /dev/null
+++ b/test/input_files/v4.4/passed/passed_meta_format_P_1.vcf
@@ -0,0 +1,16 @@
+##fileformat=VCFv4.4
+##reference=testval
+##contig=<ID=1,length=6243,assembly=B3,md5=f121111111618ff66beb2da,species="Homo sapiens",taxonomy=x>
+##INFO=<ID=SVCLAIM,Number=A,Type=String,Description="Claim made by the structural variant call. Valid values are D, J, DJ...">
+##INFO=<ID=SVLEN,Number=A,Type=Integer,Description="Length of structural variant">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=CN,Number=A,Type=Float,Description="Copy number of CNV/breakpoint">
+##INFO=<ID=RN,Number=A,Type=Integer,Description="Total number of repeat sequences in this allele">
+##INFO=<ID=RUS,Number=.,Type=String,Description="Repeat unit sequence of the corresponding repeat sequence">
+##INFO=<ID=RUC,Number=.,Type=Float,Description="Repeat unit count of corresponding repeat sequence">
+##INFO=<ID=RB,Number=.,Type=Integer,Description="Total number of bases in the corresponding repeat sequence">
+##INFO=<ID=RUB,Number=.,Type=Integer,Description="Number of bases in each individual repeat unit">
+##FORMAT=<ID=TST,Number=P,Type=Integer,Description="Test">
+##ALT=<ID=CNV:TR,Description="Tandem repeat determined based on DNA abundance">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096
+1	700	rs180734498	C	<CNV:TR>	100	PASS	CN=100;SVLEN=1;SVCLAIM=D;RUS=TTT	GT:TST	0|0:1,-1