diff --git a/poetry.lock b/poetry.lock
index adbd93c73..058e04821 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -166,14 +166,14 @@ css = ["tinycss2 (>=1.1.0,<1.2)"]
[[package]]
name = "certifi"
-version = "2023.5.7"
+version = "2023.7.22"
description = "Python package for providing Mozilla's CA Bundle."
category = "main"
optional = false
python-versions = ">=3.6"
files = [
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]
[[package]]
@@ -270,14 +270,14 @@ unicode-backport = ["unicodedata2"]
[[package]]
name = "click"
-version = "8.1.3"
+version = "8.1.7"
description = "Composable command line interface toolkit"
category = "main"
optional = false
python-versions = ">=3.7"
files = [
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- {file = "click-8.1.3.tar.gz", hash = "sha256:7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e"},
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]
[package.dependencies]
@@ -417,72 +417,64 @@ test-no-images = ["pytest", "pytest-cov", "wurlitzer"]
[[package]]
name = "coverage"
-version = "7.2.7"
+version = "7.3.1"
description = "Code coverage measurement for Python"
category = "dev"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
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]
+[package.dependencies]
+Sphinx = ">=5"
+
[package.extras]
lint = ["docutils-stubs", "flake8", "mypy"]
test = ["pytest"]
[[package]]
name = "sphinxcontrib-devhelp"
-version = "1.0.2"
-description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document."
+version = "1.0.5"
+description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents"
category = "dev"
optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
files = [
- {file = "sphinxcontrib-devhelp-1.0.2.tar.gz", hash = "sha256:ff7f1afa7b9642e7060379360a67e9c41e8f3121f2ce9164266f61b9f4b338e4"},
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]
+[package.dependencies]
+Sphinx = ">=5"
+
[package.extras]
lint = ["docutils-stubs", "flake8", "mypy"]
test = ["pytest"]
[[package]]
name = "sphinxcontrib-htmlhelp"
-version = "2.0.1"
+version = "2.0.4"
description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
category = "dev"
optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
files = [
- {file = "sphinxcontrib-htmlhelp-2.0.1.tar.gz", hash = "sha256:0cbdd302815330058422b98a113195c9249825d681e18f11e8b1f78a2f11efff"},
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]
+[package.dependencies]
+Sphinx = ">=5"
+
[package.extras]
lint = ["docutils-stubs", "flake8", "mypy"]
test = ["html5lib", "pytest"]
@@ -2997,32 +3304,38 @@ test = ["flake8", "mypy", "pytest"]
[[package]]
name = "sphinxcontrib-qthelp"
-version = "1.0.3"
-description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document."
+version = "1.0.6"
+description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents"
category = "dev"
optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
files = [
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+ {file = "sphinxcontrib_qthelp-1.0.6.tar.gz", hash = "sha256:62b9d1a186ab7f5ee3356d906f648cacb7a6bdb94d201ee7adf26db55092982d"},
]
+[package.dependencies]
+Sphinx = ">=5"
+
[package.extras]
lint = ["docutils-stubs", "flake8", "mypy"]
test = ["pytest"]
[[package]]
name = "sphinxcontrib-serializinghtml"
-version = "1.1.5"
-description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)."
+version = "1.1.9"
+description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)"
category = "dev"
optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.9"
files = [
- {file = "sphinxcontrib-serializinghtml-1.1.5.tar.gz", hash = "sha256:aa5f6de5dfdf809ef505c4895e51ef5c9eac17d0f287933eb49ec495280b6952"},
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]
+[package.dependencies]
+Sphinx = ">=5"
+
[package.extras]
lint = ["docutils-stubs", "flake8", "mypy"]
test = ["pytest"]
@@ -3109,7 +3422,7 @@ files = [
name = "tomli"
version = "2.0.1"
description = "A lil' TOML parser"
-category = "dev"
+category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -3119,54 +3432,54 @@ files = [
[[package]]
name = "tomlkit"
-version = "0.11.8"
+version = "0.12.1"
description = "Style preserving TOML library"
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
- {file = "tomlkit-0.11.8-py3-none-any.whl", hash = "sha256:8c726c4c202bdb148667835f68d68780b9a003a9ec34167b6c673b38eff2a171"},
- {file = "tomlkit-0.11.8.tar.gz", hash = "sha256:9330fc7faa1db67b541b28e62018c17d20be733177d290a13b24c62d1614e0c3"},
+ {file = "tomlkit-0.12.1-py3-none-any.whl", hash = "sha256:712cbd236609acc6a3e2e97253dfc52d4c2082982a88f61b640ecf0817eab899"},
+ {file = "tomlkit-0.12.1.tar.gz", hash = "sha256:38e1ff8edb991273ec9f6181244a6a391ac30e9f5098e7535640ea6be97a7c86"},
]
[[package]]
name = "tornado"
-version = "6.3.2"
+version = "6.3.3"
description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed."
category = "dev"
optional = false
python-versions = ">= 3.8"
files = [
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+ {file = "tornado-6.3.3-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:502fba735c84450974fec147340016ad928d29f1e91f49be168c0a4c18181e1d"},
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+ {file = "tornado-6.3.3-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:71a8db65160a3c55d61839b7302a9a400074c9c753040455494e2af74e2501f2"},
+ {file = "tornado-6.3.3-cp38-abi3-musllinux_1_1_aarch64.whl", hash = "sha256:ceb917a50cd35882b57600709dd5421a418c29ddc852da8bcdab1f0db33406b0"},
+ {file = "tornado-6.3.3-cp38-abi3-musllinux_1_1_i686.whl", hash = "sha256:7d01abc57ea0dbb51ddfed477dfe22719d376119844e33c661d873bf9c0e4a16"},
+ {file = "tornado-6.3.3-cp38-abi3-musllinux_1_1_x86_64.whl", hash = "sha256:9dc4444c0defcd3929d5c1eb5706cbe1b116e762ff3e0deca8b715d14bf6ec17"},
+ {file = "tornado-6.3.3-cp38-abi3-win32.whl", hash = "sha256:65ceca9500383fbdf33a98c0087cb975b2ef3bfb874cb35b8de8740cf7f41bd3"},
+ {file = "tornado-6.3.3-cp38-abi3-win_amd64.whl", hash = "sha256:22d3c2fa10b5793da13c807e6fc38ff49a4f6e1e3868b0a6f4164768bb8e20f5"},
+ {file = "tornado-6.3.3.tar.gz", hash = "sha256:e7d8db41c0181c80d76c982aacc442c0783a2c54d6400fe028954201a2e032fe"},
]
[[package]]
name = "tqdm"
-version = "4.65.0"
+version = "4.66.1"
description = "Fast, Extensible Progress Meter"
category = "main"
optional = false
python-versions = ">=3.7"
files = [
- {file = "tqdm-4.65.0-py3-none-any.whl", hash = "sha256:c4f53a17fe37e132815abceec022631be8ffe1b9381c2e6e30aa70edc99e9671"},
- {file = "tqdm-4.65.0.tar.gz", hash = "sha256:1871fb68a86b8fb3b59ca4cdd3dcccbc7e6d613eeed31f4c332531977b89beb5"},
+ {file = "tqdm-4.66.1-py3-none-any.whl", hash = "sha256:d302b3c5b53d47bce91fea46679d9c3c6508cf6332229aa1e7d8653723793386"},
+ {file = "tqdm-4.66.1.tar.gz", hash = "sha256:d88e651f9db8d8551a62556d3cff9e3034274ca5d66e93197cf2490e2dcb69c7"},
]
[package.dependencies]
colorama = {version = "*", markers = "platform_system == \"Windows\""}
[package.extras]
-dev = ["py-make (>=0.1.0)", "twine", "wheel"]
+dev = ["pytest (>=6)", "pytest-cov", "pytest-timeout", "pytest-xdist"]
notebook = ["ipywidgets (>=6)"]
slack = ["slack-sdk"]
telegram = ["requests"]
@@ -3189,14 +3502,14 @@ test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"]
[[package]]
name = "typing-extensions"
-version = "4.6.3"
+version = "4.7.1"
description = "Backported and Experimental Type Hints for Python 3.7+"
-category = "dev"
+category = "main"
optional = false
python-versions = ">=3.7"
files = [
- {file = "typing_extensions-4.6.3-py3-none-any.whl", hash = "sha256:88a4153d8505aabbb4e13aacb7c486c2b4a33ca3b3f807914a9b4c844c471c26"},
- {file = "typing_extensions-4.6.3.tar.gz", hash = "sha256:d91d5919357fe7f681a9f2b5b4cb2a5f1ef0a1e9f59c4d8ff0d3491e05c0ffd5"},
+ {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"},
+ {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"},
]
[[package]]
@@ -3284,21 +3597,21 @@ test = ["pytest", "pytest-cov"]
[[package]]
name = "zipp"
-version = "3.15.0"
+version = "3.16.2"
description = "Backport of pathlib-compatible object wrapper for zip files"
category = "main"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
files = [
- {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"},
- {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"},
+ {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
+ {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"},
]
[package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
[metadata]
lock-version = "2.0"
python-versions = "^3.9, <3.11"
-content-hash = "371de9220d9532ea8444cd159d270a1576f70d6041dcf2d3f39a2020a206a4a7"
+content-hash = "e94a935b0dfa2e99cdc4872cf9c625a09517f4e84881ea79a65ff553c0b67b55"
diff --git a/pyproject.toml b/pyproject.toml
index a6eb6dd0f..e8eefd7a1 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -51,6 +51,8 @@ GDAL = "3.5.1"
fiona = "1.8.21"
pygeos = "^0.14"
momepy = "0.5.0"
+pyogrio = "^0.6.0"
+joblib = "^1.3.2"
[tool.poetry.group.dev.dependencies]
isort = "^5.10.1"
@@ -78,6 +80,8 @@ pytest-cov = "^3.0.0"
pytest = "^7.1.3"
teamcity-messages = "^1.32"
testbook = "^0.4.2"
+pytest-xdist = "^3.3.1"
+pytest-profiling = "^1.7.0"
[tool.black]
line-length = 88
diff --git a/ra2ce/graph/hazard/__init__.py b/ra2ce/graph/hazard/__init__.py
new file mode 100644
index 000000000..e69de29bb
diff --git a/ra2ce/graph/hazard/hazard_common_functions.py b/ra2ce/graph/hazard/hazard_common_functions.py
new file mode 100644
index 000000000..dcb56a8bf
--- /dev/null
+++ b/ra2ce/graph/hazard/hazard_common_functions.py
@@ -0,0 +1,43 @@
+import logging
+from pathlib import Path
+from osgeo import gdal
+from networkx import Graph
+from ra2ce.graph.networks_utils import bounds_intersect_2d, get_extent
+
+
+def validate_extent_graph(extent_graph: list[float], tif_hazard_file: Path) -> None:
+ """
+ Validates the given extent graph to a hazard file (*.tif)
+
+ Args:
+ extent_graph (list[float]): List of boundary points determening the extent of a graph.
+ tif_hazard_file (Path): Hazard (*.tif) file.
+
+ Raises:
+ ValueError: When the hazard raster and the graph geometries do not overlap.
+ """
+ # Check if the hazard and graph extents overlap
+ extent = get_extent(gdal.Open(str(tif_hazard_file)))
+ extent_hazard = (
+ extent["minX"],
+ extent["maxX"],
+ extent["minY"],
+ extent["maxY"],
+ )
+
+ if not bounds_intersect_2d(extent_graph, extent_hazard):
+ logging.info("Raster extent: {}, Graph extent: {}".format(extent, extent_graph))
+ raise ValueError(
+ "The hazard raster and the graph geometries do not overlap, check projection"
+ )
+
+
+def get_edges_geoms(graph: Graph) -> list:
+ """
+ Gets all edges geometry from a provided graph.
+ """
+ return [
+ (u, v, k, edata)
+ for u, v, k, edata in graph.edges.data(keys=True)
+ if "geometry" in edata
+ ]
diff --git a/ra2ce/graph/hazard/hazard_intersect/__init__.py b/ra2ce/graph/hazard/hazard_intersect/__init__.py
new file mode 100644
index 000000000..e69de29bb
diff --git a/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_base.py b/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_base.py
new file mode 100644
index 000000000..099b7e4e0
--- /dev/null
+++ b/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_base.py
@@ -0,0 +1,41 @@
+"""
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ Risk Assessment and Adaptation for Critical Infrastructure (RA2CE).
+ Copyright (C) 2023 Stichting Deltares
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see .
+"""
+
+from geopandas import GeoDataFrame
+from networkx import Graph
+from ra2ce.graph.hazard.hazard_intersect.hazard_intersect_builder_protocol import HazardIntersectBuilderProtocol
+from abc import ABC, abstractmethod
+
+class HazardIntersectBuilderBase(ABC, HazardIntersectBuilderProtocol):
+ def get_intersection(self, hazard_overlay: GeoDataFrame | Graph) -> GeoDataFrame | Graph:
+ if isinstance(hazard_overlay, GeoDataFrame):
+ return self._from_geodataframe(hazard_overlay)
+ elif isinstance(hazard_overlay, Graph):
+ return self._from_networkx(hazard_overlay)
+ raise ValueError("No hazard intersection can be built with overlay type {}.".format(type(hazard_overlay).__name__))
+
+ @abstractmethod
+ def _from_networkx(self, hazard_overlay: GeoDataFrame | Graph) -> GeoDataFrame | Graph:
+ pass
+
+ @abstractmethod
+ def _from_geodataframe(self, hazard_overlay: GeoDataFrame | Graph) -> GeoDataFrame | Graph:
+ pass
\ No newline at end of file
diff --git a/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_for_shp.py b/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_for_shp.py
new file mode 100644
index 000000000..af7aa9634
--- /dev/null
+++ b/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_for_shp.py
@@ -0,0 +1,140 @@
+"""
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ Risk Assessment and Adaptation for Critical Infrastructure (RA2CE).
+ Copyright (C) 2023 Stichting Deltares
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see .
+"""
+
+from dataclasses import dataclass, field
+from pathlib import Path
+from typing import Callable
+from geopandas import GeoDataFrame, read_file, sjoin
+from joblib import Parallel, delayed
+from networkx import Graph
+from numpy import nanmean
+from ra2ce.graph.hazard.hazard_intersect.hazard_intersect_builder_base import (
+ HazardIntersectBuilderBase,
+)
+
+
+@dataclass
+class HazardIntersectBuilderForShp(HazardIntersectBuilderBase):
+ hazard_field_name: str = ""
+ hazard_aggregate_wl: str = ""
+ hazard_names: list[str] = field(default_factory=list)
+ ra2ce_names: list[str] = field(default_factory=list)
+ hazard_shp_files: list[str] = field(default_factory=list)
+
+ def _from_networkx(self, hazard_overlay: Graph) -> Graph:
+ """Overlays the hazard shapefile over the road segments NetworkX graph.
+
+ Args:
+ hazard_overlay (NetworkX graph): The graph that should be overlayed with the hazard shapefile(s)
+
+ Returns:
+ hazard_overlay (NetworkX graph): The graph with hazard shapefile(s) data joined
+ """
+ # TODO check if the CRS of the graph and shapefile match
+ def networkx_overlay(hazard_shp_file: Path, race_name: str):
+ gdf = read_file(str(hazard_shp_file))
+ spatial_index = gdf.sindex
+
+ for u, v, k, edata in hazard_overlay.edges.data(keys=True):
+ if "geometry" in edata:
+ possible_matches_index = list(
+ spatial_index.intersection(edata["geometry"].bounds)
+ )
+ possible_matches = gdf.iloc[possible_matches_index]
+ precise_matches = possible_matches[
+ possible_matches.intersects(edata["geometry"])
+ ]
+
+ if not precise_matches.empty:
+ if self.hazard_aggregate_wl == "max":
+ hazard_overlay[u][v][k][
+ race_name + "_" + self.hazard_aggregate_wl[:2]
+ ] = precise_matches[self.hazard_field_name].max()
+ if self.hazard_aggregate_wl == "min":
+ hazard_overlay[u][v][k][
+ race_name + "_" + self.hazard_aggregate_wl[:2]
+ ] = precise_matches[self.hazard_field_name].min()
+ if self.hazard_aggregate_wl == "mean":
+ hazard_overlay[u][v][k][
+ race_name + "_" + self.hazard_aggregate_wl[:2]
+ ] = nanmean(precise_matches[self.hazard_field_name])
+ else:
+ hazard_overlay[u][v][k][
+ race_name + "_" + self.hazard_aggregate_wl[:2]
+ ] = 0
+ else:
+ hazard_overlay[u][v][k][
+ race_name + "_" + self.hazard_aggregate_wl[:2]
+ ] = 0
+
+ # Run in parallel to boost performance.
+ self._overlay_in_parallel(networkx_overlay)
+ # for i, _ra2ce_name in self.ra2ce_names:
+ # networkx_overlay(self.hazard_shp_files[i], _ra2ce_name)
+ return hazard_overlay
+
+ def _from_geodataframe(self, hazard_overlay: GeoDataFrame) -> GeoDataFrame:
+ """Overlays the hazard shapefile over the road segments GeoDataFrame. The gdf is reprojected to the hazard shapefile if necessary.
+
+ Args:
+ hazard_overlay (GeoDataFrame): the network geodataframe that should be overlayed with the hazard shapefile(s)
+
+ Returns:
+ hazard_overlay (GeoDataFrame): the network geodataframe with hazard shapefile(s) data joined
+ """
+ gdf_crs_original = hazard_overlay.crs
+
+ def geodataframe_overlay(hazard_shp_file: Path, ra2ce_name: str):
+ gdf_hazard = read_file(str(hazard_shp_file))
+
+ if hazard_overlay.crs != gdf_hazard.crs:
+ hazard_overlay = hazard_overlay.to_crs(gdf_hazard.crs)
+
+ hazard_overlay = sjoin(
+ hazard_overlay,
+ gdf_hazard[[self.hazard_field_name, "geometry"]],
+ how="left",
+ )
+ hazard_overlay.rename(
+ columns={
+ self.hazard_field_name: ra2ce_name
+ + "_"
+ + self.hazard_aggregate_wl[:2]
+ },
+ inplace=True,
+ )
+
+ # Run in parallel to boost performance.
+ self._overlay_in_parallel(geodataframe_overlay)
+ # for i, _ra2ce_name in self.ra2ce_names:
+ # geodataframe_overlay(self.hazard_shp_files[i], _ra2ce_name)
+
+ if hazard_overlay.crs != gdf_crs_original:
+ hazard_overlay = hazard_overlay.to_crs(gdf_crs_original)
+
+ return hazard_overlay
+
+ def _overlay_in_parallel(self, overlay_func: Callable):
+ # Run in parallel to boost performance.
+ Parallel(n_jobs=2, require="sharedmem")(
+ delayed(overlay_func)(self.hazard_shp_files[i], _ra2ce_name)
+ for i, _ra2ce_name in enumerate(self.ra2ce_names)
+ )
diff --git a/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_for_table.py b/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_for_table.py
new file mode 100644
index 000000000..7af37ca95
--- /dev/null
+++ b/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_for_table.py
@@ -0,0 +1,77 @@
+"""
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ Risk Assessment and Adaptation for Critical Infrastructure (RA2CE).
+ Copyright (C) 2023 Stichting Deltares
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see .
+"""
+
+from dataclasses import dataclass
+from ra2ce.graph.hazard.hazard_intersect.hazard_intersect_builder_base import (
+ HazardIntersectBuilderBase,
+)
+
+from networkx import Graph
+from geopandas import GeoDataFrame
+from ra2ce.graph.networks_utils import (
+ graph_from_gdf,
+ graph_to_gdf,
+)
+from pandas import read_csv
+
+
+@dataclass
+class HazardIntersectBuilderForTable(HazardIntersectBuilderBase):
+ hazard_field_name: str = ""
+ network_file_id: str = ""
+ hazard_id: str = ""
+ ra2ce_name_key: str = "RA2CE name"
+
+ def _from_network_x(self, hazard_overlay: Graph) -> Graph:
+ """Joins a table with IDs and hazard information with the road segments with corresponding IDs."""
+ gdf, gdf_nodes = graph_to_gdf(hazard_overlay, save_nodes=True)
+ gdf = self._from_geodataframe(gdf)
+
+ # TODO: Check if the graph is created again correctly.
+ hazard_overlay = graph_from_gdf(gdf, gdf_nodes)
+ return hazard_overlay
+
+ def _from_geodataframe(self, hazard_overlay: GeoDataFrame):
+ """Joins a table with IDs and hazard information with the road segments with corresponding IDs."""
+ for haz in self.hazard_files["table"]:
+ if haz.suffix in [".csv"]:
+ hazard_overlay = self._join_table(hazard_overlay, haz)
+ return hazard_overlay
+
+ def _join_table(self, graph: Graph, hazard: str) -> Graph:
+ df = read_csv(hazard)
+ df = df[self.hazard_field_name]
+ graph = graph.merge(
+ df,
+ how="left",
+ left_on=self.network_file_id,
+ right_on=self.hazard_id,
+ )
+
+ graph.rename(
+ columns={
+ self.hazard_field_name: [
+ n[:-3] for n in self.hazard_name_table[self.ra2ce_name_key]
+ ][0]
+ },
+ inplace=True,
+ ) # Check if this is the right name
+ return graph
diff --git a/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_for_tif.py b/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_for_tif.py
new file mode 100644
index 000000000..60b1e953b
--- /dev/null
+++ b/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_for_tif.py
@@ -0,0 +1,232 @@
+"""
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ Risk Assessment and Adaptation for Critical Infrastructure (RA2CE).
+ Copyright (C) 2023 Stichting Deltares
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see .
+"""
+
+from dataclasses import dataclass, field
+import logging
+from pathlib import Path
+from typing import Callable
+from numpy import nan
+from rasterstats import zonal_stats
+from ra2ce.graph.hazard.hazard_common_functions import (
+ get_edges_geoms,
+ validate_extent_graph,
+)
+from ra2ce.graph.hazard.hazard_intersect.hazard_intersect_builder_base import (
+ HazardIntersectBuilderBase,
+)
+
+from networkx import Graph, set_edge_attributes
+from geopandas import GeoDataFrame
+from ra2ce.graph.networks_utils import (
+ fraction_flooded,
+ get_graph_edges_extent,
+ get_valid_mean,
+)
+from joblib import Parallel, delayed
+
+
+@dataclass
+class HazardIntersectBuilderForTif(HazardIntersectBuilderBase):
+ hazard_aggregate_wl: str = ""
+ hazard_names: list[str] = field(default_factory=list)
+ ra2ce_names: list[str] = field(default_factory=list)
+ hazard_tif_files: list[Path] = field(default_factory=list)
+
+ @property
+ def _combined_names(self) -> list[tuple[str, str]]:
+ """
+ Combines into tuples `hazard_names` and `ra2ce_names`.
+
+ Returns:
+ list[tuple[str, str]]: List of `str` tuples (hazard_name, ra2ce_name).
+ """
+ return list(zip(self.hazard_names, self.ra2ce_names))
+
+ def _from_networkx(self, hazard_overlay: Graph) -> Graph:
+ """Overlays the hazard raster over the road segments graph.
+
+ Args:
+ *hf* (list of Pathlib paths) : #not sure if this is needed as argument if we also read if from the config
+ *graph* (NetworkX Graph) : NetworkX graph with geometries that will be intersected with the hazard map raster.
+
+ Returns:
+ *graph* (NetworkX Graph) : NetworkX graph with hazard values
+ """
+ # TODO apply multiprocessing?
+ from tqdm import (
+ tqdm, # somehow this only works when importing here and not at the top of the file
+ )
+
+ # Verify the graph type (networkx)
+ assert isinstance(hazard_overlay, Graph)
+ extent_graph = get_graph_edges_extent(hazard_overlay)
+
+ # Get all edge geometries
+ edges_geoms = get_edges_geoms(hazard_overlay)
+
+ def overlay_network_x(hazard_tif_file: Path, hazard_name: str, ra2ce_name: str):
+ # Check if the hazard and graph extents overlap
+ validate_extent_graph(extent_graph, hazard_tif_file)
+ # Add a no-data value for the edges that do not have a geometry
+ set_edge_attributes(
+ hazard_overlay,
+ {
+ (u, v, k): {ra2ce_name + "_" + self.hazard_aggregate_wl[:2]: nan}
+ for u, v, k, edata in hazard_overlay.edges.data(keys=True)
+ if "geometry" not in edata
+ },
+ )
+
+ # Add the hazard values to the edges that do have a geometry
+ gdf = GeoDataFrame(
+ {"geometry": [edata["geometry"] for u, v, k, edata in edges_geoms]}
+ )
+ tqdm.pandas(desc="Graph hazard overlay with " + hazard_name)
+ _tif_hazard_files = str(hazard_tif_file)
+ if self.hazard_aggregate_wl == "mean":
+ flood_stats = gdf.geometry.progress_apply(
+ lambda x, _files_value=_tif_hazard_files: zonal_stats(
+ x,
+ _files_value,
+ all_touched=True,
+ add_stats={"mean": get_valid_mean},
+ )
+ )
+ else:
+ flood_stats = gdf.geometry.progress_apply(
+ lambda x, _files_value=_tif_hazard_files: zonal_stats(
+ x,
+ _files_value,
+ all_touched=True,
+ stats=f"{self.hazard_aggregate_wl}",
+ )
+ )
+
+ try:
+ flood_stats = flood_stats.apply(
+ lambda x: x[0][self.hazard_aggregate_wl]
+ if x[0][self.hazard_aggregate_wl]
+ else 0
+ )
+ set_edge_attributes(
+ hazard_overlay,
+ {
+ (edges[0], edges[1], edges[2]): {
+ ra2ce_name + "_" + self.hazard_aggregate_wl[:2]: x
+ }
+ for x, edges in zip(flood_stats, edges_geoms)
+ },
+ )
+ except KeyError:
+ logging.warning(
+ "No aggregation method ('aggregate_wl') is chosen - choose from 'max', 'min' or 'mean'."
+ )
+
+ # Get the fraction of the road that is intersecting with the hazard
+ tqdm.pandas(desc="Graph fraction with hazard overlay with " + hazard_name)
+ graph_fraction_flooded = gdf.geometry.progress_apply(
+ lambda x, _files_values=_tif_hazard_files: fraction_flooded(
+ x, _files_values
+ )
+ )
+ graph_fraction_flooded = graph_fraction_flooded.fillna(0)
+ set_edge_attributes(
+ hazard_overlay,
+ {
+ (edges[0], edges[1], edges[2]): {ra2ce_name + "_fr": x}
+ for x, edges in zip(graph_fraction_flooded, edges_geoms)
+ },
+ )
+
+ # Run in parallel to boost performance.
+ self._overlay_in_parallel(overlay_network_x)
+ return hazard_overlay
+
+ def _from_geodataframe(self, hazard_overlay: GeoDataFrame):
+ """Overlays the hazard raster over the road segments GeoDataFrame.
+
+ Args:
+ *graph* (GeoDataFrame) : GeoDataFrame that will be intersected with the hazard map raster.
+
+ Returns:
+
+ """
+ from tqdm import (
+ tqdm, # somehow this only works when importing here and not at the top of the file
+ )
+
+ assert isinstance(hazard_overlay, GeoDataFrame), "Network is not a GeoDataFrame"
+
+ # Make sure none of the geometries is a nonetype object (this will raise an error in zonal_stats)
+ empty_entries = hazard_overlay.loc[hazard_overlay.geometry.isnull()]
+ if any(empty_entries):
+ logging.warning(
+ (
+ "Some geometries have NoneType objects (no coordinate information), namely: {}.".format(
+ empty_entries
+ )
+ + "This could be due to segmentation, and might cause an exception in hazard overlay"
+ )
+ )
+
+ def overlay_geodataframe(
+ hazard_tif_file: Path, hazard_name: str, ra2ce_name: str
+ ):
+ # Validate input
+ # Check if network and raster overlap
+ extent_graph = (
+ hazard_overlay.total_bounds[0],
+ hazard_overlay.total_bounds[2],
+ hazard_overlay.total_bounds[1],
+ hazard_overlay.total_bounds[3],
+ )
+ validate_extent_graph(extent_graph, hazard_tif_file)
+
+ tqdm.pandas(desc="Network hazard overlay with " + hazard_name)
+ _hazard_files_str = str(hazard_tif_file)
+ flood_stats = hazard_overlay.geometry.progress_apply(
+ lambda x, _hz_str=_hazard_files_str: zonal_stats(
+ x,
+ _hz_str,
+ all_touched=True,
+ stats="min max",
+ add_stats={"mean": get_valid_mean},
+ )
+ )
+ hazard_overlay[ra2ce_name + "_mi"] = [x[0]["min"] for x in flood_stats]
+ hazard_overlay[ra2ce_name + "_ma"] = [x[0]["max"] for x in flood_stats]
+ hazard_overlay[ra2ce_name + "_me"] = [x[0]["mean"] for x in flood_stats]
+
+ tqdm.pandas(desc="Network fraction with hazard overlay with " + hazard_name)
+ hazard_overlay[ra2ce_name + "_fr"] = hazard_overlay.geometry.progress_apply(
+ lambda x, _hz_str=_hazard_files_str: fraction_flooded(x, _hz_str)
+ )
+
+ # Run in parallel to boost performance.
+ self._overlay_in_parallel(overlay_geodataframe)
+ return hazard_overlay
+
+ def _overlay_in_parallel(self, overlay_func: Callable):
+ # Run in parallel to boost performance.
+ Parallel(n_jobs=2, require="sharedmem")(
+ delayed(overlay_func)(self.hazard_tif_files[i], hn, rn)
+ for i, (hn, rn) in enumerate(self._combined_names)
+ )
diff --git a/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_protocol.py b/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_protocol.py
new file mode 100644
index 000000000..7b0d5b135
--- /dev/null
+++ b/ra2ce/graph/hazard/hazard_intersect/hazard_intersect_builder_protocol.py
@@ -0,0 +1,31 @@
+"""
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ Risk Assessment and Adaptation for Critical Infrastructure (RA2CE).
+ Copyright (C) 2023 Stichting Deltares
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see .
+"""
+
+from typing import Protocol
+from geopandas import GeoDataFrame
+from networkx import Graph
+
+
+class HazardIntersectBuilderProtocol(Protocol):
+ def get_intersection(
+ self, hazard_overlay: GeoDataFrame| Graph
+ ) -> GeoDataFrame | Graph:
+ pass
diff --git a/ra2ce/graph/hazard.py b/ra2ce/graph/hazard/hazard_overlay.py
similarity index 71%
rename from ra2ce/graph/hazard.py
rename to ra2ce/graph/hazard/hazard_overlay.py
index d9dbc8278..05968e2a6 100644
--- a/ra2ce/graph/hazard.py
+++ b/ra2ce/graph/hazard/hazard_overlay.py
@@ -21,7 +21,6 @@
import logging
-import time
from pathlib import Path
from typing import Any, List, Tuple, Union
@@ -30,16 +29,28 @@
import numpy as np
import pandas as pd
import pyproj
-from osgeo import gdal
from rasterstats import point_query, zonal_stats
from ra2ce.common.io.readers import GraphPickleReader
from ra2ce.graph import networks_utils as ntu
from ra2ce.graph.exporters.network_exporter_factory import NetworkExporterFactory
+from ra2ce.graph.hazard.hazard_common_functions import (
+ get_edges_geoms,
+ validate_extent_graph,
+)
+from ra2ce.graph.hazard.hazard_intersect.hazard_intersect_builder_for_shp import (
+ HazardIntersectBuilderForShp,
+)
+from ra2ce.graph.hazard.hazard_intersect.hazard_intersect_builder_for_table import (
+ HazardIntersectBuilderForTable,
+)
+from ra2ce.graph.hazard.hazard_intersect.hazard_intersect_builder_for_tif import (
+ HazardIntersectBuilderForTif,
+)
from ra2ce.graph.network_config_data.network_config_data import NetworkConfigData
-class Hazard:
+class HazardOverlay:
"""Class where the hazard overlay happens.
Attributes:
@@ -88,92 +99,6 @@ def __init__(self, config: NetworkConfigData, graphs: dict, files: dict):
)
logging.info("Initialized hazard object.")
- def overlay_hazard_raster_gdf(self, gdf: gpd.GeoDataFrame) -> gpd.GeoDataFrame:
- """Overlays the hazard raster over the road segments GeoDataFrame.
-
- Args:
- *graph* (GeoDataFrame) : GeoDataFrame that will be intersected with the hazard map raster.
-
- Returns:
-
- """
- from tqdm import (
- tqdm, # somehow this only works when importing here and not at the top of the file
- )
-
- assert type(gdf) == gpd.GeoDataFrame, "Network is not a GeoDataFrame"
-
- # Make sure none of the geometries is a nonetype object (this will raise an error in zonal_stats)
- empty_entries = gdf.loc[gdf.geometry.isnull()]
- if any(empty_entries):
- logging.warning(
- (
- "Some geometries have NoneType objects (no coordinate information), namely: {}.".format(
- empty_entries
- )
- + "This could be due to segmentation, and might cause an exception in hazard overlay"
- )
- )
-
- for i, (hn, rn) in enumerate(zip(self.hazard_names, self.ra2ce_names)):
- # Validate input
- # Check if network and raster overlap
- extent_graph = gdf.total_bounds
- extent_graph = (
- extent_graph[0],
- extent_graph[2],
- extent_graph[1],
- extent_graph[3],
- )
- self._validate_extent_graph(extent_graph, i)
-
- tqdm.pandas(desc="Network hazard overlay with " + hn)
- _hazard_files_str = str(self.hazard_files["tif"][i])
- flood_stats = gdf.geometry.progress_apply(
- lambda x, _hz_str=_hazard_files_str: zonal_stats(
- x,
- _hz_str,
- all_touched=True,
- stats="min max",
- add_stats={"mean": ntu.get_valid_mean},
- )
- )
- gdf[rn + "_mi"] = [x[0]["min"] for x in flood_stats]
- gdf[rn + "_ma"] = [x[0]["max"] for x in flood_stats]
- gdf[rn + "_me"] = [x[0]["mean"] for x in flood_stats]
-
- tqdm.pandas(desc="Network fraction with hazard overlay with " + hn)
- gdf[rn + "_fr"] = gdf.geometry.progress_apply(
- lambda x, _hz_str=_hazard_files_str: ntu.fraction_flooded(x, _hz_str)
- )
- return gdf
-
- def _get_edges_geoms(self, graph: nx.Graph) -> List[Any]:
- # Get all edge geometries
- return [
- (u, v, k, edata)
- for u, v, k, edata in graph.edges.data(keys=True)
- if "geometry" in edata
- ]
-
- def _validate_extent_graph(self, extent_graph, n_idx: int):
- # Check if the hazard and graph extents overlap
- extent = ntu.get_extent(gdal.Open(str(self.hazard_files["tif"][n_idx])))
- extent_hazard = (
- extent["minX"],
- extent["maxX"],
- extent["minY"],
- extent["maxY"],
- )
-
- if not ntu.bounds_intersect_2d(extent_graph, extent_hazard):
- logging.info(
- "Raster extent: {}, Graph extent: {}".format(extent, extent_graph)
- )
- raise ValueError(
- "The hazard raster and the graph geometries do not overlap, check projection"
- )
-
def overlay_hazard_raster_graph(
self, graph: nx.classes.graph.Graph
) -> nx.classes.graph.Graph:
@@ -189,15 +114,15 @@ def overlay_hazard_raster_graph(
from tqdm import tqdm
# Verify the graph type (networkx)
- assert type(graph).__module__.split(".")[0] == "networkx"
+ assert isinstance(graph, nx.classes.graph.Graph)
extent_graph = ntu.get_graph_edges_extent(graph)
# Get all edge geometries
- edges_geoms = self._get_edges_geoms(graph)
+ edges_geoms = get_edges_geoms(graph)
for i, (hn, rn) in enumerate(zip(self.hazard_names, self.ra2ce_names)):
# Check if the hazard and graph extents overlap
- self._validate_extent_graph(extent_graph, i)
+ validate_extent_graph(extent_graph, self.hazard_files["tif"][i])
# Add a no-data value for the edges that do not have a geometry
nx.set_edge_attributes(
graph,
@@ -271,88 +196,6 @@ def overlay_hazard_raster_graph(
return graph
- def overlay_hazard_shp_gdf(self, gdf: gpd.GeoDataFrame) -> gpd.GeoDataFrame:
- """Overlays the hazard shapefile over the road segments GeoDataFrame.
-
- Args:
- gdf (GeoDataFrame): the network geodataframe that should be overlayed with the hazard shapefile(s)
-
- Returns:
- gdf (GeoDataFrame): the network geodataframe with hazard shapefile(s) data joined
-
- The gdf is reprojected to the hazard shapefile if necessary.
- """
- gdf_crs_original = gdf.crs
-
- for i, (hn, rn, hfn) in enumerate(
- zip(self.hazard_names, self.ra2ce_names, self._hazard_field_name)
- ):
- gdf_hazard = gpd.read_file(str(self.hazard_files["shp"][i]))
-
- if gdf.crs != gdf_hazard.crs:
- gdf = gdf.to_crs(gdf_hazard.crs)
-
- gdf = gpd.sjoin(gdf, gdf_hazard[[hfn, "geometry"]], how="left")
- gdf.rename(
- columns={hfn: rn + "_" + self._hazard_aggregate_wl[:2]}, inplace=True
- )
-
- if gdf.crs != gdf_crs_original:
- gdf = gdf.to_crs(gdf_crs_original)
-
- return gdf
-
- def overlay_hazard_shp_graph(
- self, graph: nx.classes.graph.Graph
- ) -> nx.classes.graph.Graph:
- """Overlays the hazard shapefile over the road segments NetworkX graph.
-
- Args:
- graph (NetworkX graph): The graph that should be overlayed with the hazard shapefile(s)
-
- Returns:
- graph (NetworkX graph): The graph with hazard shapefile(s) data joined
- """
- # TODO check if the CRS of the graph and shapefile match
-
- hfns = self._hazard_config.hazard_field_name
-
- for i, (hn, rn, hfn) in enumerate(
- zip(self.hazard_names, self.ra2ce_names, hfns)
- ):
- gdf = gpd.read_file(str(self.hazard_files["shp"][i]))
- spatial_index = gdf.sindex
-
- for u, v, k, edata in graph.edges.data(keys=True):
- if "geometry" in edata:
- possible_matches_index = list(
- spatial_index.intersection(edata["geometry"].bounds)
- )
- possible_matches = gdf.iloc[possible_matches_index]
- precise_matches = possible_matches[
- possible_matches.intersects(edata["geometry"])
- ]
-
- if not precise_matches.empty:
- if self._hazard_aggregate_wl == "max":
- graph[u][v][k][
- rn + "_" + self._hazard_aggregate_wl[:2]
- ] = precise_matches[hfn].max()
- if self._hazard_aggregate_wl == "min":
- graph[u][v][k][
- rn + "_" + self._hazard_aggregate_wl[:2]
- ] = precise_matches[hfn].min()
- if self._hazard_aggregate_wl == "mean":
- graph[u][v][k][
- rn + "_" + self._hazard_aggregate_wl[:2]
- ] = np.nanmean(precise_matches[hfn])
- else:
- graph[u][v][k][rn + "_" + self._hazard_aggregate_wl[:2]] = 0
- else:
- graph[u][v][k][rn + "_" + self._hazard_aggregate_wl[:2]] = 0
-
- return graph
-
def od_hazard_intersect(
self, graph: nx.classes.graph.Graph, ods: gpd.GeoDataFrame
) -> Tuple[nx.classes.graph.Graph, gpd.GeoDataFrame]:
@@ -369,7 +212,7 @@ def od_hazard_intersect(
## Intersect the origin and destination nodes with the hazard map (now only geotiff possible)
# Verify the graph type (networkx)
- assert type(graph).__module__.split(".")[0] == "networkx"
+ assert isinstance(graph, nx.classes.graph.Graph)
extent_graph = ntu.get_graph_edges_extent(graph)
# Get all node geometries
@@ -377,11 +220,11 @@ def od_hazard_intersect(
od_ids = [n[0] for n in od_nodes]
# Get all edge geometries
- edges_geoms = self._get_edges_geoms(graph)
+ edges_geoms = get_edges_geoms(graph)
for i, (hn, rn) in enumerate(zip(self.hazard_names, self.ra2ce_names)):
# Check if the hazard and graph extents overlap
- self._validate_extent_graph(extent_graph, i)
+ validate_extent_graph(extent_graph, self.hazard_files["tif"][i])
# Read the hazard values at the nodes and write to the nodes.
tqdm.pandas(desc="Destinations hazard overlay with " + hn)
@@ -489,58 +332,6 @@ def point_hazard_intersect(self, gdf: gpd.GeoDataFrame) -> gpd.GeoDataFrame:
return gdf
- def join_hazard_table_gdf(self, gdf: gpd.GeoDataFrame) -> gpd.GeoDataFrame:
- """Joins a table with IDs and hazard information with the road segments with corresponding IDs.
-
- Args:
-
- Returns:
-
- """
- for haz in self.hazard_files["table"]:
- if haz.suffix in [".csv"]:
- gdf = self.join_table(gdf, haz)
- return gdf
-
- def join_hazard_table_graph(
- self, graph: nx.classes.graph.Graph
- ) -> nx.classes.graph.Graph:
- """Joins a table with IDs and hazard information with the road segments with corresponding IDs.
-
- Args:
-
- Returns:
-
- """
- gdf, gdf_nodes = ntu.graph_to_gdf(graph, save_nodes=True)
- gdf = self.join_hazard_table_gdf(gdf)
-
- # TODO: Check if the graph is created again correctly.
- graph = ntu.graph_from_gdf(gdf, gdf_nodes)
- return graph
-
- def join_table(
- self, graph: nx.classes.graph.Graph, hazard: str
- ) -> nx.classes.graph.Graph:
- df = pd.read_csv(hazard)
- df = df[self._hazard_field_name]
- graph = graph.merge(
- df,
- how="left",
- left_on=self._network_file_id,
- right_on=self._hazard_id,
- )
-
- graph.rename(
- columns={
- self._hazard_field_name: [
- n[:-3] for n in self.hazard_name_table[self._ra2ce_name_key]
- ][0]
- },
- inplace=True,
- ) # Check if this is the right name
- return graph
-
def get_point_hazard_from_network(
self, points: gpd.GeoDataFrame, network: gpd.GeoDataFrame
) -> gpd.GeoDataFrame:
@@ -641,99 +432,38 @@ def get_filtered_files(*suffix) -> list[Path]:
_hazard_files["table"] = get_filtered_files(".csv", ".json")
return _hazard_files
- def get_hazard_intersect_geodataframe_tif(
- self, to_overlay: Union[gpd.GeoDataFrame, nx.classes.graph.Graph]
- ):
- """Logic to find the right hazard overlay function for the input to_overlay.
-
- Args:
- to_overlay (GeoDataFrame or NetworkX graph): Data that needs to be overlayed with a or multiple hazard maps.
-
- Returns:
- to_overlay (GeoDataFrame or NetworkX graph): The same data as input but with hazard values.
-
- The hazard file paths are in self.hazard_files.
- """
- start = time.time()
- to_overlay = self.overlay_hazard_raster_gdf(to_overlay)
- end = time.time()
- logging.info(f"Hazard raster intersect time: {str(round(end - start, 2))}s")
- return to_overlay
-
- def get_hazard_intersect_networkx_tif(
- self, to_overlay: Union[gpd.GeoDataFrame, nx.classes.graph.Graph]
- ):
- start = time.time()
- to_overlay = self.overlay_hazard_raster_graph(to_overlay)
- end = time.time()
- logging.info(f"Hazard raster intersect time: {str(round(end - start, 2))}s")
- return to_overlay
-
- def get_hazard_intersect_geodataframe_shp(
- self, to_overlay: Union[gpd.GeoDataFrame, nx.classes.graph.Graph]
- ):
- start = time.time()
- to_overlay = self.overlay_hazard_shp_gdf(to_overlay)
- end = time.time()
- logging.info(f"Hazard shapefile intersect time: {str(round(end - start, 2))}s")
- return to_overlay
-
- def get_hazard_intersect_networkx_shp(
- self, to_overlay: Union[gpd.GeoDataFrame, nx.classes.graph.Graph]
- ):
- start = time.time()
- to_overlay = self.overlay_hazard_shp_graph(to_overlay)
- end = time.time()
- logging.info(f"Hazard shapefile intersect time: {str(round(end - start, 2))}s")
- return to_overlay
-
- def get_hazard_intersect_geodataframe_table(
- self, to_overlay: Union[gpd.GeoDataFrame, nx.classes.graph.Graph]
- ):
- start = time.time()
- to_overlay = self.join_hazard_table_gdf(to_overlay)
- end = time.time()
- logging.info(f"Hazard table intersect time: {str(round(end - start, 2))}s")
- return to_overlay
-
- def get_hazard_intersect_networkx_table(
- self, to_overlay: Union[gpd.GeoDataFrame, nx.classes.graph.Graph]
- ):
- start = time.time()
- to_overlay = self.join_hazard_table_graph(to_overlay)
- end = time.time()
- logging.info(f"Hazard table intersect time: {str(round(end - start, 2))}s")
- return to_overlay
-
def hazard_intersect(
self, to_overlay: Union[gpd.GeoDataFrame, nx.classes.graph.Graph]
) -> Union[gpd.GeoDataFrame, nx.classes.graph.Graph]:
"""Handler function that chooses the right function for overlaying the network with the hazard data."""
- if self.hazard_files["tif"] and (type(to_overlay) == gpd.GeoDataFrame):
- to_overlay = self.get_hazard_intersect_geodataframe_tif(to_overlay)
- elif self.hazard_files["tif"] and (
- type(to_overlay).__module__.split(".")[0] == "networkx"
- ):
- to_overlay = self.get_hazard_intersect_networkx_tif(to_overlay)
- elif (self.hazard_files["shp"]) and (type(to_overlay) == gpd.GeoDataFrame):
- to_overlay = self.get_hazard_intersect_geodataframe_shp(to_overlay)
- elif (self.hazard_files["shp"]) and (
- type(to_overlay).__module__.split(".")[0] == "networkx"
- ):
- to_overlay = self.get_hazard_intersect_networkx_shp(to_overlay)
- elif (self.hazard_files["table"]) and (type(to_overlay) == gpd.GeoDataFrame):
- to_overlay = self.get_hazard_intersect_geodataframe_table(to_overlay)
- elif (self.hazard_files["table"]) and (
- type(to_overlay).__module__.split(".")[0] == "networkx"
- ):
- to_overlay = self.get_hazard_intersect_networkx_table(to_overlay)
- else:
- logging.warning(
- f"The overlay of the combination of hazard file(s) '{self.hazard_files}' and network type '{type(to_overlay)}' is not available."
- f"Please check your input data."
- )
-
- return to_overlay
+ # To improve performance we need to initialize the variables
+ if self.hazard_files["tif"]:
+ return HazardIntersectBuilderForTif(
+ hazard_aggregate_wl=self._hazard_aggregate_wl,
+ hazard_names=self.hazard_names,
+ ra2ce_names=self.ra2ce_names,
+ hazard_tif_files=self.hazard_files["tif"],
+ ).get_intersection(to_overlay)
+ elif self.hazard_files["shp"]:
+ return HazardIntersectBuilderForShp(
+ hazard_field_name=self._hazard_field_name,
+ hazard_aggregate_wl=self._hazard_aggregate_wl,
+ hazard_names=self.hazard_names,
+ ra2ce_names=self.ra2ce_names,
+ hazard_shp_files=self.hazard_files["shp"],
+ ).get_intersection(to_overlay)
+ elif self.hazard["table"]:
+ return HazardIntersectBuilderForTable(
+ hazard_field_name=self._hazard_field_name,
+ network_file_id=self._network_file_id,
+ hazard_id=self._hazard_id,
+ ra2ce_name_key=self._ra2ce_name_key,
+ ).get_intersection(to_overlay)
+
+ raise ValueError(
+ f"The overlay of the combination of hazard file(s) '{self.hazard_files}' and network type '{type(to_overlay)}' is not available."
+ f"Please check your input data."
+ )
def get_reproject_graph(
self,
diff --git a/ra2ce/graph/network_config_wrapper.py b/ra2ce/graph/network_config_wrapper.py
index 03e01168b..5d5ff3e36 100644
--- a/ra2ce/graph/network_config_wrapper.py
+++ b/ra2ce/graph/network_config_wrapper.py
@@ -30,7 +30,7 @@
from ra2ce.common.configuration.config_wrapper_protocol import ConfigWrapperProtocol
from ra2ce.common.io.readers import GraphPickleReader
-from ra2ce.graph.hazard import Hazard
+from ra2ce.graph.hazard.hazard_overlay import HazardOverlay
from ra2ce.graph.network_config_data.network_config_data import NetworkConfigData
from ra2ce.graph.network_config_data.network_config_data_validator import (
NetworkConfigDataValidator,
@@ -166,7 +166,7 @@ def configure_hazard(self) -> None:
return
# There is a hazard map or multiple hazard maps that should be intersected with the graph.
- hazard = Hazard(self.config_data, self.graphs, self.files)
+ hazard = HazardOverlay(self.config_data, self.graphs, self.files)
self.graphs = hazard.create()
def is_valid(self) -> bool:
diff --git a/tests/graph/hazard/__init__.py b/tests/graph/hazard/__init__.py
new file mode 100644
index 000000000..e69de29bb
diff --git a/tests/graph/test_hazard.py b/tests/graph/hazard/test_hazard_overlay.py
similarity index 75%
rename from tests/graph/test_hazard.py
rename to tests/graph/hazard/test_hazard_overlay.py
index 50234836c..9c25534b2 100644
--- a/tests/graph/test_hazard.py
+++ b/tests/graph/hazard/test_hazard_overlay.py
@@ -1,10 +1,10 @@
from pathlib import Path
-from ra2ce.graph.hazard import Hazard
+from ra2ce.graph.hazard.hazard_overlay import HazardOverlay
from ra2ce.graph.network_config_data.network_config_data import NetworkConfigData
-class TestHazard:
+class TestHazardOverlay:
def test_initialize(self):
# 1. Define test data.
_config = NetworkConfigData()
@@ -15,10 +15,10 @@ def test_initialize(self):
_files = {}
# 2. Run test.
- _hazard = Hazard(_config, _graphs, _files)
+ _hazard = HazardOverlay(_config, _graphs, _files)
# 3. Verify final expectations.
- assert isinstance(_hazard, Hazard)
+ assert isinstance(_hazard, HazardOverlay)
assert any(_hazard.hazard_names)
assert any(_hazard.ra2ce_names)
assert any(_hazard.hazard_files)