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PANDORA is not retrieving the MHC-II chain sequence from the reference database #33

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DarioMarzella opened this issue Jul 20, 2022 · 0 comments
Open

PANDORA is not retrieving the MHC-II chain sequence from the reference database #33

DarioMarzella opened this issue Jul 20, 2022 · 0 comments
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3D-modelling notes Things to remember that do not necessarily cause an issue at the moment, but may do in the future pMHC-II

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@DarioMarzella
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For HLA-DRB1:01*01, PANDORA could not retrieve the reference sequence from the database and ended up using the template sequences.

This is not an issue for this allele (because there are templates with the right sequence) but it is an issue for all-allele modelling.
@DarioMarzella DarioMarzella added pMHC-II notes Things to remember that do not necessarily cause an issue at the moment, but may do in the future 3D-modelling labels Jul 20, 2022
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3D-modelling notes Things to remember that do not necessarily cause an issue at the moment, but may do in the future pMHC-II
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