pom.xml

<?xml version="1.0" encoding="UTF-8"?>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">

    <modelVersion>4.0.0</modelVersion>
    <groupId>org.healthnlp</groupId>
    <artifactId>deepphe-omop</artifactId>
    <version>0.1.0</version>
    <name>deepphe-omop</name>
    <description>Cancer Deep Phenotype Extraction (DeepPhe) OMOP module</description>
    <packaging>jar</packaging>

    <properties>
        <java.version>11</java.version>
        <maven.compiler.source>11</maven.compiler.source>
        <maven.compiler.target>11</maven.compiler.target>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
    </properties>

    <dependencies>

        <dependency>
            <groupId>org.healthnlp</groupId>
            <artifactId>deepphe-nlp</artifactId>
            <version>0.7.0</version>
        </dependency>

        <dependency>
            <groupId>org.healthnlp</groupId>
            <artifactId>deepphe-onto-db2</artifactId>
            <version>0.7.0</version>
        </dependency>

    </dependencies>

    <build>
        <!-- It's good practice to explicitly declare versions for all plugins -->
        <plugins>

            <plugin>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.8.1</version>
            </plugin>
            <plugin>
                <!-- This generates a jar-file with our procedure code,
                plus any dependencies marked as `compile` scope.  aka uber-jar.
                This should then be deployed in the `plugins` directory
                of each Neo4j instance in your deployment.
                After a restart, the procedure is available for calling. -->
                <artifactId>maven-shade-plugin</artifactId>
                <version>3.2.2</version>
                <configuration>
                    <createDependencyReducedPom>false</createDependencyReducedPom>
                </configuration>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>shade</goal>
                        </goals>
                        <configuration>
                            <filters>
                                <filter>
                                    <artifact>*:*</artifact>
                                    <excludes>
                                        <exclude>META-INF/*.SF</exclude>
                                        <exclude>META-INF/*.DSA</exclude>
                                        <exclude>META-INF/*.RSA</exclude>
                                    </excludes>
                                </filter>
                            </filters>
                            <transformers>
                                <transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
                                    <mainClass>org.healthnlp.deepphe.omop.DpheOmopDocRunner</mainClass>
                                </transformer>
                            </transformers>
                        </configuration>
                    </execution>
                </executions>
            </plugin>

        </plugins>
    </build>
</project>