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Revert "Version number updates"
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This reverts commit 72c4091.
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yuanzhou committed Apr 25, 2019
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# DeepPhe-Viz v0.3.0
# DeepPhe-Viz v0.2.0

The DeepPhe NLP extracts information from the patient cancer reports and stores the data in Neo4j graph database. The DeepPhe-Viz tool represents the extracted information in an organized workflow to end users, enabling exploration and discovery of patient data.

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You must have the following tools installed:

- [Nodejs 10.13.0 (includes npm 6.4.1) or the latest LTS version](https://nodejs.org/en/download/) - which the DeepPhe-Viz tool is built upon
- [Neo4j 3.5.x Server](https://neo4j.com/download-center/#releases) - is used to store the graph output from DeepPhe NLP
- [Neo4j 3.2.x Server](https://neo4j.com/download-center/#releases) - is used to store the graph output from DeepPhe NLP

if you need to manage multiple versions of NodeJS, we have been successfully using the [nvm](https://github.com/creationix/nvm) tool to configure and manage our NodeJS environment; nvm enables a user to associate a paritcular NodeJS and NPM version with their Unix shell, allowing for each switching between NodeJS versions across different projects.

For neo4j server installation, we have tested the "Neo4j Community Edition 3.5.1" with this DeepPhe release, and you can download it from the [Neo4j Releases page](https://neo4j.com/download-center/#releases) by choosing the correct download for your platform. Then follow their [installation instructions](https://neo4j.com/docs/operations-manual/current/installation/) to configure and start the server.
For neo4j server installation, we have tested the "Neo4j Community Edition 3.2.13" with this DeepPhe release, and you can download it from the [Neo4j Releases page](https://neo4j.com/download-center/#releases) by choosing the correct download for your platform. Then follow their [installation instructions](https://neo4j.com/docs/operations-manual/current/installation/) to configure and start the server.

![Neo4j server download](neo4j_server_download.png "Neo4j server download")

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dbms.active_database=deepphe.db
````

You'll also have a file named `deepphe-viz-0.3.0-plugin.zip` in the directory `deepphe-viz-neo4j/target` after building the [DeepPhe system](https://github.com/DeepPhe/DeepPhe-Release/blob/master/README.md). This compressed file contains a directory named `plugins`. All the jar files of the `plugins` directory must be copied to `<NEO4J_HOME>/plugins` directory. The DeepPhe-Viz uses these libraries to interact with the customized DeepPhe system database.
You'll also have a file named `deepphe-viz-0.2.0-plugin.zip` in the directory `deepphe-viz-neo4j/target` after building the [DeepPhe system](https://github.com/DeepPhe/DeepPhe-Release/blob/master/README.md). This compressed file contains a directory named `plugins`. All the jar files of the `plugins` directory must be copied to `<NEO4J_HOME>/plugins` directory. The DeepPhe-Viz uses these libraries to interact with the customized DeepPhe system database.

To run Neo4j as a console application, use:
`./<NEO4J_HOME>/bin/neo4j console`
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