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Using Hail with dsub #440

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buutrg opened this issue Jul 14, 2023 · 0 comments

buutrg commented Jul 14, 2023

Hi all, I am trying to use hail via dsub to extract a subset of variants in All of Us server. I think this is the most relevant image I can use https://github.com/DataBiosphere/terra-docker/tree/master/terra-jupyter-hail

But it result in error that pyspark is not found. I tried to install pyspark from https://dlcdn.apache.org/spark/spark-3.1.3/spark-3.1.3-bin-hadoop3.tgz. Now it says No FileSystem for scheme "gs".

May I ask do you have any idea how to use hail via dsub?
Your help is really appreciated!

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