Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[Feature Request] Addition of adjusted PValues to GSEA Result #134

Open
bvenn opened this issue Jan 4, 2023 · 0 comments
Open

[Feature Request] Addition of adjusted PValues to GSEA Result #134

bvenn opened this issue Jan 4, 2023 · 0 comments

Comments

@bvenn
Copy link
Member

bvenn commented Jan 4, 2023

In 9/10 cases when performing an gene set enrichment analysis it is required to perform a multiple testing correction. It would beneficial to add the following fields to the GSEAResult type:

  1. FDR(BH) -> false discovery rate based on the final GSEA result array
  2. QValue -> qvalue based on the final GSEA result array
  3. PI0 -> quality parameter to check the qvalue for validity
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant