test-cice.yml

name: GHActions

# This workflow is triggered on pushes, pull-requeust, and releases
# ghactions* branch names will trigger this to support development testing
# To Do: get it working with bash and ubuntu

on:
  push:
    branches:
      - master
      - 'CICE*'
      - 'ghactions*'
  pull_request:
  release:
    types:
      - created

defaults:
  run:
    shell: /bin/csh -e {0}

jobs:
  build:
    name: "CICETesting"
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
#        os: [macos-latest, ubuntu-latest]
        os: [macos-latest]
#        os: [ubuntu-latest]
        include: 
          - os: macos-latest
            envdef: macos
            minicond: Miniconda3-latest-MacOSX-x86_64.sh
#          - os: ubuntu-latest
#            envdef: linux
#            minicond: Miniconda3-latest-Linux-x86_64.sh
    steps:
      - name: reset macos toolchain to commandlinetools
        shell: /bin/bash {0}
        if: contains( matrix.envdef, 'macos')
        run: |
          sudo xcode-select -r
          sudo xcode-select -s /Library/Developer/CommandLineTools
          sudo ln -s /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/* /usr/local/include/
          echo "xcrun --show-sdk-path: $(xcrun --show-sdk-path)"
          echo "xcode-select -p: $(xcode-select -p)"
      - name: system info
        shell: /bin/bash {0}
        run: |
          type wget
          type curl
          type csh
          echo "readlink \$(which csh): $(python -c 'import os, sys; print os.path.realpath(sys.argv[1])' $(which csh))"
          echo "csh --version: $(csh --version)"
          echo "uname -a: $(uname -a)"
          echo "sw_vers: $(sw_vers)"
          echo "HOME: $HOME"
          echo "GITHUB_WORKSPACE: $GITHUB_WORKSPACE"
          echo "OS: ${{ matrix.os }}"
          echo "ENVDEF: ${{ matrix.envdef }}"
          echo "MINICOND: ${{ matrix.minicond }}"
          echo "tcx1"
          ls -alr /System/Library/Frameworks/Security.framework
          echo "tcx2"
          ls -alr /System/Library/Frameworks/Security.framework/Versions
          echo "tcx3"
          ls -alr /System/Library/Frameworks/Security.framework/Versions/A
          echo "tcx4"
          ls -alr /System/Library/Frameworks/Security.framework/Versions/A/Security
          echo "tcx5"
          env
          echo "tcx6"
          env | grep -i frameworks
          echo "tcx7"
          echo "tcx8"
          echo "tcx9"
      - name : install miniconda
        shell: /bin/bash {0}
        run: |
          wget https://repo.anaconda.com/miniconda/${{ matrix.minicond }} -O ~/miniconda.sh
          bash ~/miniconda.sh -b -p $HOME/miniconda
      - name: clone
        uses: actions/checkout@v2
        with:
          submodules: 'recursive'
      - name: link
        run: |
           ln -s ${GITHUB_WORKSPACE}/../CICE ${HOME}/cice
#           ls -al ${HOME}/
#           ls -al ${GITHUB_WORKSPACE}/
      - name: check for tabs
        run: |
          cd $HOME/cice/cicecore
          set cnt = 0
          set ffiles = `find -P . -iname "*.f*"`
          set cfiles = `find -P . -iname "*.c*"`
          foreach file ($ffiles $cfiles)
            set fcnt = `sed -n '/\t/p' $file | wc -l`
            @ cnt = $cnt + $fcnt
            if ($fcnt > 0) then
               echo "TAB found: $fcnt $file"
            endif
          end
          exit $cnt
      - name: setup conda env
        shell: /bin/bash {0}
        run: |
          cd $HOME && mkdir -p cice-dirs/runs cice-dirs/baseline cice-dirs/input
          source $HOME/miniconda/bin/activate
          conda init tcsh
          cd $HOME/cice
          conda env create -f configuration/scripts/machines/environment.yml
      - name: check conda env
        run: |
          conda activate cice && which mpicc && which mpifort && which make
          mpifort --version
          mpicc --version
          make --version
          echo "tcx5"
          env
          echo "tcx6"
          env | grep -i frameworks
          exit -9
      - name: check setup case
        run: |
          cd $HOME/cice
          ./cice.setup -m conda -e ${{ matrix.envdef }} -c case0 --pes 1x1 -s diag1
      - name: check setup test
        run: |
          cd $HOME/cice
          ./cice.setup -m conda -e ${{ matrix.envdef }} --test smoke --testid c0
#      - name: compile case
#        run: |
#          cd $HOME/cice
#          ./cice.setup -m conda -e ${{ matrix.envdef }} -c case1
#          cd case1
#          ./cice.build
      - name: download input data
        run: |
          cd $HOME/cice-dirs/input
          wget --progress=dot:giga https://zenodo.org/record/3728358/files/CICE_data_gx3_grid_ic-20200320.tar.gz && tar xvfz CICE_data_gx3_grid_ic-20200320.tar.gz
          wget --progress=dot:giga https://zenodo.org/record/3728362/files/CICE_data_gx3_forcing_NCAR_bulk-20200320.tar.gz && tar xvfz CICE_data_gx3_forcing_NCAR_bulk-20200320.tar.gz
          wget --progress=dot:giga https://zenodo.org/record/3728364/files/CICE_data_gx3_forcing_JRA55-20200320.tar.gz && tar xvfz CICE_data_gx3_forcing_JRA55-20200320.tar.gz
          pwd
          ls -alR
#      - name: run case
#        run: |
#          cd $HOME/cice
#          cd case1
#          ./cice.run
      - name: run suite
        run: |
          cd $HOME/cice
          ./cice.setup -m conda -e ${{ matrix.envdef }} --suite travis_suite --testid ${{ matrix.os }}
      - name: write output
        run: |
          cd $HOME/cice
          ./.github/workflows/write_logfiles.csh
          cd testsuite.${{ matrix.os }}
          ./results.csh
      - name: successful run
        if: ${{ success() }}
        run: |
          echo "${{ job.name }} PASSED"
      - name: trap failure
        if: ${{ failure() }}
        run: |
          echo "${{ job.name }} FAILED"
          exit 99