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Thank you for sharing this pipeline. I am trying to run it on my neonate data (infants scanned within 3 months of birth). I formatted my data to match the suggested command to run it in docker. I am running it on Windows 10 but I also got the same error on my mac (Sierra). I have attached the log. Thank you for your help!
Best,
Alex subject1-session1.segmentation.log
The text was updated successfully, but these errors were encountered:
Thank you for creating this pipeline. After successful segmentation, when it begins the surface reconstruction part I have the following error:
pipeline/build/MIRTK/build/lib/python/mirtk/deformable/neonatal_cortex.py", line 213, in output else: path = name_or_func()
TypeError: 'unicode' object is not callable
Error: recon-neonatal-cortex command returned non-zero exit status 1
I deleted the parenthesis so the line 213 now reads else: path = name_or_func
This fix allows the surface pipeline to run now, but I want to double check with you the developers.
Additional info, I am running this code on Ubuntu 18.1 from a virtual machine.
Hi all,
Thank you for sharing this pipeline. I am trying to run it on my neonate data (infants scanned within 3 months of birth). I formatted my data to match the suggested command to run it in docker. I am running it on Windows 10 but I also got the same error on my mac (Sierra). I have attached the log. Thank you for your help!
Best,
Alex
subject1-session1.segmentation.log
The text was updated successfully, but these errors were encountered: