Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add cloud pilot quality control workflows #380

Open
fnothaft opened this issue Jul 25, 2016 · 0 comments
Open

Add cloud pilot quality control workflows #380

fnothaft opened this issue Jul 25, 2016 · 0 comments
Assignees
@fnothaft
Labels
firecloud ready spark/adam

Comments

@fnothaft
Copy link
Contributor

fnothaft commented Jul 25, 2016 •
edited
Loading

See BD2KGenomics/cgl-docker-lib#150.
@fnothaft fnothaft self-assigned this Jul 25, 2016
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 25, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
0cbbc7d 
…mics#380)

* Adds the quinine tool (https://github.com/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 25, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
04ebd7a 
…mics#380)

* Adds the quinine tool (https://github.com/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 25, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
417fcaf 
…mics#380)

* Adds the quinine tool (https://github.com/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 26, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
fef077d 
…mics#380)

* Adds the quinine tool (https://github.com/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 26, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
1b35411 
…mics#380)

* Adds the quinine tool (https://github.com/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 26, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
716dd26 
…mics#380)

* Adds the quinine tool (https://github.com/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 26, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
6881e4a 
…mics#380)

* Adds the quinine tool (https://github.com/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Aug 1, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
eed1ef8 
…mics#380)

* Adds the quinine tool (https://github.com/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
@ejacox ejacox added ready and removed in progress labels Jul 31, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@fnothaft fnothaft

Labels
firecloud ready spark/adam
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@fnothaft @hannes-ucsc @ejacox