Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Epilepsy detection #355

Open
jkim0731 opened this issue Nov 2, 2023 · 2 comments
Open

Epilepsy detection #355

jkim0731 opened this issue Nov 2, 2023 · 2 comments
Labels
issue type: QC Issue QC issue or trend not captured by existing reporting

Comments

@jkim0731
Copy link
Collaborator

jkim0731 commented Nov 2, 2023

Describe the Issue
There is one case where the mouse showed epileptic seizure, which is not captured by the QC system.
Mouse ID: 685789
Ophys Session ID: 1299480707

Expected behavior
Session QC "Interictal Events" detecting this issue

Screenshots
image
image
image
https://alleninstitute-my.sharepoint.com/:p:/g/personal/jinho_kim_alleninstitute_org/EeRvwo3hEB9Lro1fVVH1tJIBbYvum2CtDe1yG6SMlnAZGA?e=lmDFor

  • Behavior video
    \allen\programs\mindscope\production\learning\prod0\specimen_1285218327\ophys_session_1299480707\1299480707_Behavior_20230925T112439.mp4 (10:29)

  • 2p videos
    \allen\programs\mindscope\production\learning\prod0\specimen_1285218327\ophys_session_1299480707\ophys_experiment_1299621010\processed\1299621010_suite2p_motion_preview.webm (1:07)

\allen\programs\mindscope\production\learning\prod0\specimen_1285218327\ophys_session_1299480707\ophys_experiment_1299621008\processed\1299621008_suite2p_motion_preview.webm (1:07)

@jkim0731 jkim0731 added the issue type: QC Issue QC issue or trend not captured by existing reporting label Nov 2, 2023
@macarenasa
Copy link
Collaborator

TO do:

  • re farctor code to run on full session (smaller epochs?)
  • specify types of events this code will detect.
  • Plot: first 5 min. FOV Fluorescence intensity: Have an averaged fluorescence trace across the hour.
  • New ticket: add flag for "abnormal appearance"

@samiamseid
Copy link
Collaborator

connected to issue #12

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
issue type: QC Issue QC issue or trend not captured by existing reporting
Projects
None yet
Development

No branches or pull requests

3 participants