Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Replace z-drift metric function with Jinho's newest drift calcuation #351

Open
arielleleon opened this issue Oct 19, 2023 · 3 comments
Open

Replace z-drift metric function with Jinho's newest drift calcuation #351

arielleleon opened this issue Oct 19, 2023 · 3 comments
Labels
effort: small 1-2 days worth of work
Projects
Dev-QC: October

Comments

@arielleleon
Copy link

No description provided.

@arielleleon arielleleon created this issue from a note in Dev-QC: October (Need-to-Have's) Oct 19, 2023
@arielleleon arielleleon changed the title Replace z-drift metric function with Jinho's latest method for calculating Replace z-drift metric function with Jinho's newest drift calcuation Oct 19, 2023
@jkim0731
Copy link
Collaborator

It would be also good to plot the correlation graph, or at least the peak value of the correlation to QC the algorithm. It should be higher than ~ 0.6.

In the future, we might be able to set a threshold on the peak correlation value to semi-automatically QC them.
My guess is that this value may depend on the expression pattern and SNR - something to watch out for later.

@jkim0731
Copy link
Collaborator

jkim0731 commented Nov 1, 2023

A test data (where manual z-drift calculation overrode automatic calculation):
http://mouse-seeks/qc/ophys/experiment/1306747798#zdrift_visual_inspection

@macarenasa macarenasa added the effort: small 1-2 days worth of work label Nov 27, 2023
@samiamseid
Copy link
Collaborator

connected to the following issues:
#180
#38
#35

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
effort: small 1-2 days worth of work
Projects
Dev-QC: October
Need-to-Have's
Milestone
No milestone
Development

No branches or pull requests
4 participants
@jkim0731 @samiamseid @arielleleon @macarenasa