Clone repo -> access data in all notebooks

AICAN-Research · Aug 10, 2023 · 948e21d · 948e21d
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commit 948e21d
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Showing 8 changed files with 104 additions and 2 deletions.
diff --git a/apps/bc_incidence_over_time.ipynb b/apps/bc_incidence_over_time.ipynb
@@ -20,6 +20,17 @@
     "!pip install -q -U pandas plotly nbformat kaleido"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Clone repo to get access to data/ directory\n",
+    "!git clone https://github.com/andreped/breast-cancer-stats.git\n",
+    "%cd breast-cancer-stats/apps/"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 19,

diff --git a/apps/bc_incidence_over_time_age_groups.ipynb b/apps/bc_incidence_over_time_age_groups.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
     {
@@ -22,7 +22,32 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 6,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Cloning into 'breast-cancer-stats'...\n",
+      "remote: Enumerating objects: 339, done.\u001b[K\n",
+      "remote: Counting objects: 100% (142/142), done.\u001b[K\n",
+      "remote: Compressing objects: 100% (91/91), done.\u001b[K\n",
+      "remote: Total 339 (delta 86), reused 103 (delta 49), pack-reused 197\u001b[K\n",
+      "Receiving objects: 100% (339/339), 1.88 MiB | 9.02 MiB/s, done.\n",
+      "Resolving deltas: 100% (174/174), done.\n"
+     ]
+    }
+   ],
+   "source": [
+    "# Clone repo to get access to data/ directory\n",
+    "!git clone https://github.com/andreped/breast-cancer-stats.git\n",
+    "%cd breast-cancer-stats/apps/"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 7,
    "metadata": {},
    "outputs": [
     {

diff --git a/apps/bc_mortality_over_time.ipynb b/apps/bc_mortality_over_time.ipynb
@@ -20,6 +20,17 @@
     "!pip install -q -U pandas plotly nbformat kaleido"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Clone repo to get access to data/ directory\n",
+    "!git clone https://github.com/andreped/breast-cancer-stats.git\n",
+    "%cd breast-cancer-stats/apps/"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 15,

diff --git a/apps/bc_mortality_over_time_age_groups.ipynb b/apps/bc_mortality_over_time_age_groups.ipynb
@@ -20,6 +20,17 @@
     "!pip install -q -U pandas plotly nbformat kaleido"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Clone repo to get access to data/ directory\n",
+    "!git clone https://github.com/andreped/breast-cancer-stats.git\n",
+    "%cd breast-cancer-stats/apps/"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 44,

diff --git a/apps/bc_survival.ipynb b/apps/bc_survival.ipynb
@@ -20,6 +20,17 @@
     "!pip install -q -U pandas plotly nbformat kaleido"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Clone repo to get access to data/ directory\n",
+    "!git clone https://github.com/andreped/breast-cancer-stats.git\n",
+    "%cd breast-cancer-stats/apps/"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 10,

diff --git a/apps/breast_cancer_incidence_rate.ipynb b/apps/breast_cancer_incidence_rate.ipynb
@@ -20,6 +20,17 @@
     "!pip install -q -U pandas plotly nbformat kaleido"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Clone repo to get access to data/ directory\n",
+    "!git clone https://github.com/andreped/breast-cancer-stats.git\n",
+    "%cd breast-cancer-stats/apps/"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 8,

diff --git a/apps/breast_cancer_mortality_rate.ipynb b/apps/breast_cancer_mortality_rate.ipynb
@@ -20,6 +20,17 @@
     "!pip install -q -U pandas plotly nbformat kaleido"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Clone repo to get access to data/ directory\n",
+    "!git clone https://github.com/andreped/breast-cancer-stats.git\n",
+    "%cd breast-cancer-stats/apps/"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 30,

diff --git a/apps/breast_cancer_statistics.ipynb b/apps/breast_cancer_statistics.ipynb
@@ -20,6 +20,17 @@
     "!pip install -q -U pandas plotly"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Clone repo to get access to data/ directory\n",
+    "!git clone https://github.com/andreped/breast-cancer-stats.git\n",
+    "%cd breast-cancer-stats/apps/"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 10,