build.yml

# This workflow will build a Java project with Maven
# For more information see: https://help.github.com/actions/language-and-framework-guides/building-and-testing-java-with-maven

name: Java CI with Maven

on:
  push:
    branches:
      - master
  pull_request:
    types: [opened, synchronize, reopened]

jobs:
  build:
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -l {0}
    steps:
    - uses: actions/checkout@v3
      with:
        fetch-depth: 0
    - name: Set up JDK 17
      uses: actions/setup-java@v3
      with:
        java-version: 17
        distribution: 'temurin'
        cache: maven
    - uses: mamba-org/setup-micromamba@v1
      with:
        environment-name: test-env
        create-args: >-
          python=3.10
          rdkit
    - name: Python dependencies
      run: pip install sygma
    - name: Build with Maven
      run: mvn -B package
    - name: Build and analyze
      env:
        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}  # Needed to get PR information, if any
        SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
      run: xvfb-run mvn -B verify org.sonarsource.scanner.maven:sonar-maven-plugin:sonar -Dsonar.projectKey=3D-e-Chem_knime-sygma